Species-specific class I gene expansions formed the telomeric 1 mb of the mouse major histocompatibility complex

Genome Res. 2003 Apr;13(4):589-600. doi: 10.1101/gr.975303.

Abstract

We have determined the complete sequence of 951,695 bp from the class I region of H2, the mouse major histocompatibility complex (Mhc) from strain 129/Sv (haplotype bc). The sequence contains 26 genes. The sequence spans from the last 50 kb of the H2-T region, including 2 class I genes and 3 class I pseudogenes, and includes the H2-M region up to Gabbr1. A 500-kb stretch of the H2-M region contains 9 class I genes and 4 pseudogenes, which fall into two subfamilies, M1 and M10, distinct from other mouse class I genes. This M1/M10 class I gene-cluster is separated from the centromeric H2-T and the telomeric H2-M4, -5 and -6 class I genes by "nonclass I genes". Comparison with the corresponding 853-kb region of the human Mhc, which includes the HLA-A region, shows a mosaic of conserved regions of orthologous nonclass I genes separated by regions of species-specific expansion of paralogous Mhc class I genes. The analysis of this mosaic structure illuminates the dynamic evolution of the Mhc class I region among mammals and provides evidence for the framework hypothesis.

Publication types

  • Comparative Study
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence / genetics
  • Animals
  • Base Composition / genetics
  • Centromere / genetics
  • Cluster Analysis
  • Computational Biology / methods
  • Computational Biology / statistics & numerical data
  • Evolution, Molecular
  • Genome
  • H-2 Antigens / genetics*
  • Histocompatibility Antigens Class II / chemistry
  • Histocompatibility Antigens Class II / genetics
  • Humans
  • Mice
  • Mice, Inbred Strains
  • Molecular Sequence Data
  • Physical Chromosome Mapping / methods
  • Sequence Analysis, DNA / methods
  • Species Specificity

Substances

  • H-2 Antigens
  • H2-M antigens
  • Histocompatibility Antigens Class II

Associated data

  • GENBANK/AC005413
  • GENBANK/AC005665
  • GENBANK/AF532111
  • GENBANK/AF532112
  • GENBANK/AF532113
  • GENBANK/AF532114
  • GENBANK/AF532115
  • GENBANK/AF532116
  • GENBANK/AF532117