Characterization of the human beta-globin downstream promoter region

Nucleic Acids Res. 2003 Feb 15;31(4):1292-301. doi: 10.1093/nar/gkg209.

Abstract

The human beta-globin gene is abundantly expressed specifically in adult erythroid cells. Stage-specific transcription is regulated principally by promoter proximal cis-regulatory elements. The basal promoter contains a non-canonical TATA-like motif as well as an initiator element. These two elements have been shown to interact with the TFII-D complex. Here we show that in addition to the TATA and initiator elements, conserved E-box motifs are located in the beta-globin downstream promoter. One of the E-box motifs overlaps the initiator and this composite element interacts with USF1 and TFII-I in vitro. Another E-box, located 60 bp 3' to the transcription initiation site, interacts with USF1 and USF2. Mutations of either the initiator or the downstream E-box impair transcription of the beta-globin gene in vitro. Mutations of a putative NF-E2-binding site in the downstream promoter region do not affect transcription in vitro. USF1, USF2, TFII-I and p45 can be crosslinked to a beta-globin promoter fragment in MEL cells in vivo, whereas only TFII-I and USF2 crosslink to the beta-globin gene in K562 cells. The summary data demonstrate that in addition to the well-characterized interactions of the TFII-D complex with the basal promoter, E-box motifs contribute to the efficient formation of transcription complexes on the adult beta-globin gene.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • 3T3 Cells
  • Animals
  • Base Sequence
  • Binding Sites / genetics
  • DNA-Binding Proteins / metabolism
  • Electrophoretic Mobility Shift Assay
  • Erythroid-Specific DNA-Binding Factors
  • Globins / genetics
  • Globins / metabolism*
  • Humans
  • K562 Cells
  • Mice
  • Models, Biological
  • Molecular Sequence Data
  • Mutation
  • NF-E2 Transcription Factor
  • NF-E2 Transcription Factor, p45 Subunit
  • Promoter Regions, Genetic / genetics*
  • Protein Binding
  • Sequence Homology, Nucleic Acid
  • Transcription Factors / metabolism
  • Transcription Factors, TFII / metabolism
  • Tumor Cells, Cultured
  • Upstream Stimulatory Factors

Substances

  • DNA-Binding Proteins
  • Erythroid-Specific DNA-Binding Factors
  • GTF2I protein, human
  • Gtf2i protein, mouse
  • NF-E2 Transcription Factor
  • NF-E2 Transcription Factor, p45 Subunit
  • NFE2 protein, human
  • Nfe2 protein, mouse
  • Transcription Factors
  • Transcription Factors, TFII
  • USF1 protein, human
  • USF2 protein, human
  • Upstream Stimulatory Factors
  • Usf1 protein, mouse
  • Usf2 protein, mouse
  • Globins