HIV-1 genetic recombination: experimental approaches and observations

AIDS Rev. 2002 Oct-Dec;4(4):195-212.

Abstract

Many HIV-1 isolates contain interwoven genomic sections derived from multiple parental strains. Such chimeric genomes arise via genetic recombination. This review summarizes experimental approaches for addressing the frequency of HIV-1 genetic recombination during single cycles of viral replication in vitro, and describes factors--such as variation in extents of sequence homology and the metabolic state of the infected cell--that modulate recombination. Findings from such studies suggest that recombinogenic template switching is an even more common occurrence during HIV-1 DNA synthesis than is the introduction of base substitution errors. This implies that recombination is an inherent property of retroviral DNA synthesis, and that the vast majority of HIV-1 DNAs are biochemical recombinants.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.
  • Review

MeSH terms

  • DNA Replication
  • DNA, Viral / biosynthesis
  • DNA, Viral / chemistry*
  • DNA, Viral / genetics
  • Genetic Vectors
  • HIV-1 / genetics*
  • HIV-1 / physiology
  • Humans
  • Nucleic Acid Conformation
  • Recombination, Genetic*

Substances

  • DNA, Viral