Rational optimization of a short human P-selectin-binding peptide leads to nanomolar affinity antagonists

J Biol Chem. 2003 Mar 21;278(12):10201-7. doi: 10.1074/jbc.M209267200. Epub 2003 Jan 13.

Abstract

P-selectin plays an important role in the development of various diseases, including atherosclerosis and thrombosis. In our laboratory we recently identified a number of specific human P-selectin-binding peptides containing a Glu-Trp-Val-Asp-Val consensus motif, displaying a low micromolar affinity for P-selectin (IC(50) = 2 microm). In search of more potent antagonists for P-selectin, we have optimized the EWVDV pentapeptide core motif via a two-step combinatorial chemistry approach. A dedicated library of peptide derivatives was generated by introducing seven substituents at the N and C termini of the motif. In particular, pentapeptides with gallic acid or 1,3,5-benzenetricarboxylic acid substituents at the N terminus proved to be considerably more potent inhibitors of P-selectin binding than the parental peptide. After removal of the N-terminal glutamic acid from the core sequence, which appeared to be replaceable by a carboxamide function without loss of affinity, a second library was synthesized to map the chemical moieties within the gallic acid or 1,3,5-benzenetricarboxyl acid groups responsible for the enhanced P-selectin binding. Moreover, by varying the length and rigidity of the connective spacer, we have further optimized the spatial orientation of the N-terminal substituent. The combined use of phage display and subsequent combinatorial chemistry led to the design of a number of gallic acid- containing peptides with low nanomolar affinity for P-selectin both under static and dynamic conditions (IC(50) = 15.4 nm). These small synthetic antagonists, which are equally as potent as the natural ligand P-selectin glycoprotein ligand-1, are promising leads in anti-atherothrombotic therapy.

MeSH terms

  • Amino Acid Sequence
  • Carrier Proteins / metabolism
  • Carrier Proteins / pharmacology
  • Combinatorial Chemistry Techniques*
  • Drug Design*
  • Humans
  • Molecular Sequence Data
  • P-Selectin / metabolism*
  • Peptides / metabolism
  • Peptides / pharmacology*
  • Structure-Activity Relationship

Substances

  • Carrier Proteins
  • P-Selectin
  • Peptides