Crystallization and preliminary X-ray crystallographic analysis of peptide deformylase from Pseudomonas aeruginosa

Acta Crystallogr D Biol Crystallogr. 2002 Oct;58(Pt 10 Pt 2):1874-5. doi: 10.1107/s0907444902013835. Epub 2002 Sep 28.

Abstract

Peptide deformylase (PDF) from the pathogenic bacterium Pseudomonas aeruginosa has been overexpressed in Escherichia coli and crystallized in the presence of its inhibitor actinonin at 297 K using polyethylene glycol (PEG) 4000 as a precipitant. The diffraction limit and the spot shape of the crystals could be slightly improved by the crystal annealing/dehydration procedure. X-ray diffraction data to 1.85 A have been collected using synchrotron radiation. The crystal belongs to the orthorhombic space group P2(1)2(1)2(1), with unit-cell parameters a = 68.75, b = 74.46, c = 77.18 A. The asymmetric unit contains two subunits of peptide deformylase, with a corresponding crystal volume per protein mass (V(M)) of 2.45 A(3) Da(-1) and a solvent content of 49.8%.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amidohydrolases*
  • Aminopeptidases / chemistry*
  • Aminopeptidases / isolation & purification
  • Cloning, Molecular
  • Crystallization
  • Crystallography, X-Ray / methods
  • Escherichia coli / genetics
  • Pseudomonas aeruginosa / enzymology*
  • Pseudomonas aeruginosa / genetics
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / isolation & purification

Substances

  • Recombinant Proteins
  • Aminopeptidases
  • Amidohydrolases
  • peptide deformylase

Associated data

  • PDB/1BS4