Design and synthesis of type-III mimetics of omega-conotoxin GVIA

J Comput Aided Mol Des. 2001 Dec;15(12):1119-36. doi: 10.1023/a:1015930031890.

Abstract

Our interest lies in the rational design and synthesis of type-III mimetics of protein and polypeptide structure and function. Our approach involves interactive design of conformationally defined molecular scaffolds that project certain functional groups in a way that mimics the projection of important binding residues as determined in the parent structure. These design principles are discussed and applied to the structurally defined polypeptide, omega-conotoxin GVIA, which blocks voltage-gated, neuronal N-type calcium channels. These ion channels represent therapeutic targets for the development of new analgesics that can treat chronic pain. It is shown how a discontinuous, 3-residue pharmacophore of GVIA can be mimicked by different molecular scaffolds. It is illustrated how such 1st generation leads must necessarily be weak and that optimisability must therefore be built-in during the design process.

MeSH terms

  • Analgesics / chemical synthesis
  • Analgesics / chemistry
  • Binding Sites
  • Calcium Channel Blockers / chemical synthesis
  • Calcium Channel Blockers / chemistry
  • Calcium Channels, N-Type / chemistry
  • Calcium Channels, N-Type / drug effects
  • Crystallography, X-Ray
  • Drug Design*
  • Humans
  • In Vitro Techniques
  • Magnetic Resonance Spectroscopy
  • Models, Molecular
  • Molecular Mimicry
  • Protein Conformation
  • omega-Conotoxin GVIA / chemistry*

Substances

  • Analgesics
  • Calcium Channel Blockers
  • Calcium Channels, N-Type
  • omega-Conotoxin GVIA