De novo determination of peptide structure with solid-state magic-angle spinning NMR spectroscopy

Proc Natl Acad Sci U S A. 2002 Aug 6;99(16):10260-5. doi: 10.1073/pnas.152346599. Epub 2002 Jul 29.

Abstract

The three-dimensional structure of the chemotactic peptide N-formyl-l-Met-l-Leu-l-Phe-OH was determined by using solid-state NMR (SSNMR). The set of SSNMR data consisted of 16 (13)C-(15)N distances and 18 torsion angle constraints (on 10 angles), recorded from uniformly (13)C,(15)N- and (15)N-labeled samples. The peptide's structure was calculated by means of simulated annealing and a newly developed protocol that ensures that all of conformational space, consistent with the structural constraints, is searched completely. The result is a high-quality structure of a molecule that has thus far not been amenable to single-crystal diffraction studies. The extensions of the SSNMR techniques and computational methods to larger systems appear promising.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • N-Formylmethionine Leucyl-Phenylalanine / chemistry*
  • Nuclear Magnetic Resonance, Biomolecular / methods
  • Peptides / chemistry
  • Protein Structure, Tertiary

Substances

  • Peptides
  • N-Formylmethionine Leucyl-Phenylalanine