Antibacterial activities and characterization of novel inhibitors of LpxC

Antimicrob Agents Chemother. 2002 Jun;46(6):1793-9. doi: 10.1128/AAC.46.6.1793-1799.2002.

Abstract

Lipid A is the hydrophobic anchor of lipopolysaccharide (LPS) and forms the major lipid component of the outer monolayer of the outer membrane of gram-negative bacteria. Lipid A is required for bacterial growth and virulence, and inhibition of its biosynthesis is lethal to bacteria. UDP-3-O-(R-3-hydroxymyristoyl)-N-acetylglucosamine deacetylase (LpxC) is a metalloenzyme that catalyzes the second step in the biosynthesis of lipid A. Inhibitors of LpxC have previously been shown to have antibiotic activities. We have screened a metalloenzyme inhibitor library for antibacterial activities against an Escherichia coli strain with reduced LpxC activity. From this screen, a series of sulfonamide derivatives of the alpha-(R)-amino hydroxamic acids, exemplified by BB-78484 and BB-78485, have been identified as having potent inhibitory activities against LpxC in an in vitro assay. Leads from this series showed gram-negative selective activities against members of the Enterobacteriaceae, Serratia marcescens, Morganella morganii, Haemophilus influenzae, Moraxella catarrhalis, and Burkholderia cepacia. BB-78484 was bactericidal against E. coli, achieving 3-log killing in 4 h at a concentration 4 times above the MIC, as would be predicted for an inhibitor of lipid A biosynthesis. E. coli mutants with decreased susceptibility to BB-78484 were selected. Analysis of these mutants revealed that resistance arose as a consequence of mutations in the fabZ or lpxC genes. These data confirm the antibacterial target of BB-78484 and BB-78485 and validate LpxC as a target for gram-negative selective antibacterials.

MeSH terms

  • Amidohydrolases / antagonists & inhibitors*
  • Amidohydrolases / genetics
  • Anti-Bacterial Agents / pharmacology*
  • Bacteria / drug effects*
  • Bacteria / enzymology
  • Bacteria / genetics
  • DNA, Recombinant / genetics
  • Drug Resistance, Microbial
  • Drug Synergism
  • Enzyme Inhibitors / pharmacology*
  • Escherichia coli / genetics
  • Genotype
  • Hydro-Lyases / genetics
  • Microbial Sensitivity Tests
  • Mutation / genetics
  • Naphthalenes / pharmacology*
  • Plasmids / genetics
  • Reverse Transcriptase Polymerase Chain Reaction
  • Sulfonamides / pharmacology*
  • Time Factors

Substances

  • Anti-Bacterial Agents
  • BB-78484
  • BB-78485
  • DNA, Recombinant
  • Enzyme Inhibitors
  • Naphthalenes
  • Sulfonamides
  • Amidohydrolases
  • UDP-3-O-acyl-N-acetylglucosamine deacetylase
  • Hydro-Lyases
  • beta-hydroxyacyl-(acyl-carrier-protein)dehydrase