Comparison of extraction methods for the recovery, amplification and species-specific analysis of DNA from bone and bone meals

Electrophoresis. 2002 Apr;23(7-8):1005-12. doi: 10.1002/1522-2683(200204)23:7/8<1005::AID-ELPS1005>3.0.CO;2-1.

Abstract

We report the effect of several parameters on the efficiency of recovery of DNA from animal bones. The effects of preheating the samples (at either 60 degrees C or 100 degrees C) at different intervals (from 1 h to overnight) in different media (water, 0.5 M ethylenediaminetetraacetic acid (EDTA), or 0.5 M EDTA + 0.05% sodium dodecyl sulfate (SDS) were investigated. The effect of slight (5 min) or intense (30 min) pretreatments with ultrasound was also evaluated. Several different treatments with proteinase K (ranging from 200 to 800 microg, and lasting from 1 to 3 h) at 65 degrees C were also considered. Additionally, two different DNA extraction methods (based on silica resins and purification columns, respectively) were evaluated. The recovery of DNA from the samples was 40% higher when the bones were preheated in 0.5 M EDTA at 60 degrees C for 1 h, this being followed by treatment with 800 microg of proteinase K for 3 h. The DNA thus obtained was successfully amplified by polymerase chain reaction (PCR) using a set of primers specific to a 359 bp region of the mitochondrial cytochrome b gene, and the species of origin were identified by visualizing the restriction fragment length polymorphism (RFLP) with the endonucleases PalI and MboI.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Biological Products
  • Bone and Bones / chemistry*
  • DNA / analysis*
  • Minerals / chemistry*
  • Polymerase Chain Reaction
  • Sensitivity and Specificity
  • Species Specificity

Substances

  • Biological Products
  • Minerals
  • DNA
  • bone meal