The structural basis for catalysis and specificity of the Pseudomonas cellulosa alpha-glucuronidase, GlcA67A

Structure. 2002 Apr;10(4):547-56. doi: 10.1016/s0969-2126(02)00742-6.

Abstract

Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. The structure of the alpha-glucuronidase, GlcA67A, from Pseudomonas cellulosa reveals three domains, the central of which is a (beta/alpha)(8) barrel housing the catalytic apparatus. Complexes of the enzyme with the individual reaction products, either xylobiose or glucuronic acid, and the ternary complex of both glucuronic acid and xylotriose reveal a "blind" pocket which selects for short decorated xylooligosaccharides substituted with the uronic acid at their nonreducing end, consistent with kinetic data. The catalytic center reveals a constellation of carboxylates; Glu292 is poised to provide protonic assistance to leaving group departure with Glu393 and Asp365 both appropriately positioned to provide base-catalyzed assistance for inverting nucleophilic attack by water.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites
  • Crystallography, X-Ray
  • Glycoside Hydrolases / chemistry*
  • Glycoside Hydrolases / metabolism*
  • Ligands
  • Models, Molecular
  • Molecular Structure
  • Protein Structure, Quaternary
  • Protein Structure, Tertiary
  • Pseudomonas / enzymology*
  • Substrate Specificity

Substances

  • Ligands
  • Glycoside Hydrolases
  • alpha-glucuronidase

Associated data

  • PDB/1GQI
  • PDB/1GQJ
  • PDB/1GQK
  • PDB/1GQL