Classification of three airborne bacteria and proposal of Hymenobacter aerophilus sp. nov

Int J Syst Evol Microbiol. 2002 Mar;52(Pt 2):445-456. doi: 10.1099/00207713-52-2-445.

Abstract

Three aerobic, gram-negative, rod-shaped, non-spore-forming, red-pigmented, airborne bacteria (I/26-Cor1T, I/32A-Cor1 and I/74-Cor2) collected in the Museo Correr (Venice, Italy) were investigated to determine their taxonomic status by analysing their biochemical, physiological and chemotaxonomic features and the G+C content of genomic DNA and by comparing their genomic fingerprints. Additionally, the almost complete 16S rRNA gene sequence of strain I/26-Cor1T was analysed. The three strains were nearly identical in their morphological, physiological, biochemical and chemotaxonomic properties. The strains contained a menaquinone system with the predominant menaquinone MK-7 and a fatty acid profile with C15:0 anteiso, C15:0 iso and C16:1 predominant. Phosphatidylethanolamine and several unidentified lipids were detected in the polar lipid profiles. The polyamine pattern consisted of sym-homospermidine as the major compound. meso-Diaminopimelic acid was found as the characteristic cell-wall diamino acid. The DNA base composition of the three strains ranged from 60 to 63 mol% G+C. Phylogenetically, strain I/26-Cor1T was most closely related to Hymenobacter actinosclerus (95.8% 16S rRNA gene sequence similarity). Physiological and genomic characteristics indicated that the two strains I/26-Cor1T and I/32A-Cor1 are representatives of the same species. The phylogenetic distance to any validly described taxon as indicated by 16S rRNA gene sequence similarities demonstrates that I/26-Cor1T and I/32A-Cor1 represent a novel species, for which the name Hymenobacter aerophilus sp. nov. is proposed, with the type strain I/26-Cor1T (= DSM 13606T = LMG 19657T). I/32A-Cor1 (= DSM 13607 = LMG 19658) is another strain of the species Hymenobacter aerophilus. Since the taxonomic status of strain I/74-Cor2 within the genus Hymenobacter was not determined unambiguously, it is designated Hymenobacter sp. I/74-Cor2 (= DSM 13611 = LMG 19659).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Air Microbiology*
  • Base Composition
  • Cell Wall / chemistry
  • DNA Fingerprinting
  • DNA, Bacterial / chemistry
  • Diaminopimelic Acid / analysis
  • Fatty Acids / analysis
  • Gram-Negative Aerobic Rods and Cocci / chemistry
  • Gram-Negative Aerobic Rods and Cocci / classification*
  • Gram-Negative Aerobic Rods and Cocci / physiology
  • Italy
  • Molecular Sequence Data
  • Museums
  • Phylogeny
  • Pigments, Biological
  • RNA, Ribosomal / chemistry
  • RNA, Ribosomal, 16S / chemistry
  • Sequence Homology, Nucleic Acid
  • Species Specificity

Substances

  • DNA, Bacterial
  • Fatty Acids
  • Pigments, Biological
  • RNA, Ribosomal
  • RNA, Ribosomal, 16S
  • Diaminopimelic Acid

Associated data

  • GENBANK/AJ276901