Running rings around RNA: a superfamily of phosphate-dependent RNases

Trends Biochem Sci. 2002 Jan;27(1):11-8. doi: 10.1016/s0968-0004(01)01999-5.

Abstract

The exosome of Saccharomyces cerevisiae and the degradosome of Escherichia coli are multienzyme complexes involved in the degradation of mRNA. Both contain enzymes that are similar to the phosphate-dependent exoribonuclease RNase PH. These enzymes are phosphorylases that degrade RNA from the 3'-end. A recent X-ray crystallographic study of the polynucleotide phosphorylase (PNPase) from Streptomyces antibioticus reveals, for the first time, the atomic structure of a member of the RNase PH superfamily. Here, information from the structure of PNPase is used to address two related issues. First, the structure supports the idea that PNPase, which is a trimer of multidomain subunits, arose by duplication of a gene encoding an RNase PH-like enzyme. Second, the structure might explain how RNase PH-like enzymes associate into oligomeric rings that degrade RNA in a processive reaction.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Amino Acid Sequence
  • Escherichia coli / enzymology*
  • Exoribonucleases / chemistry*
  • Exoribonucleases / metabolism
  • Humans
  • Molecular Sequence Data
  • Polyribonucleotide Nucleotidyltransferase / chemistry*
  • Protein Conformation
  • Protein Folding
  • RNA / chemistry*
  • Saccharomyces cerevisiae / enzymology*
  • Sequence Homology, Amino Acid

Substances

  • RNA
  • ribonuclease PH
  • Polyribonucleotide Nucleotidyltransferase
  • Exoribonucleases