The Protein Data Bank: unifying the archive

Nucleic Acids Res. 2002 Jan 1;30(1):245-8. doi: 10.1093/nar/30.1.245.

Abstract

The Protein Data Bank (PDB; http://www.pdb.org/) is the single worldwide archive of structural data of biological macromolecules. This paper describes the progress that has been made in validating all data in the PDB archive and in releasing a uniform archive for the community. We have now produced a collection of mmCIF data files for the PDB archive (ftp://beta.rcsb.org/pub/pdb/uniformity/data/mmCIF/). A utility application that converts the mmCIF data files to the PDB format (called CIFTr) has also been released to provide support for existing software.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Archives
  • Database Management Systems
  • Databases, Protein*
  • Enzymes / chemistry
  • Forecasting
  • Information Storage and Retrieval
  • Internet
  • Ligands
  • Polymers / chemistry
  • Protein Conformation
  • Proteins / chemistry*
  • Quality Control
  • Stereoisomerism
  • Terminology as Topic
  • User-Computer Interface

Substances

  • Enzymes
  • Ligands
  • Polymers
  • Proteins