Assignment of Pseudomonas sp. strain E-3 to Pseudomonas psychrophila sp. nov., a new facultatively psychrophilic bacterium

Extremophiles. 2001 Oct;5(5):343-9. doi: 10.1007/s007920100199.

Abstract

A facultatively psychrophilic bacterium, previously described as Pseudomonas sp. strain E-3, has been reassigned by phenotypic characterization, chemotaxonomic analysis, DNA-DNA hybridization, and 16S rRNA gene phylogenetic analysis. The organism was a gram-negative, aerobic. straight rod with polar flagella. It was catalase positive and oxidase positive, able to grow at -1 degree C but not at 40 degree C, and produced acid from D-glucose under aerobic conditions. The major isoprenoid quinone was ubiquinone-9, and the DNA G + C content was 57.2 mol%. Phylogenetic analysis based on 16S rRNA gene sequencing indicated that the bacterium is a member of the genus Pseudomonas and was closest to Pseudomonas fragi. Determination of the DNA-DNA relatedness between strain E-3 and P. fragi revealed too low a level of homology (47.9%-51.3%) to identify them as the same species. On the basis of phenotypic characteristics, phylogenetic analysis, and DNA-DNA relatedness data, it is concluded that strain E-3 represents an individual species. Accordingly, the name Pseudomonas psychrophila is proposed. The type strain is E-3T (= JCM 10889).

MeSH terms

  • Base Composition
  • Cold Temperature
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • Microscopy, Electron
  • Phenotype
  • Phylogeny
  • Pseudomonas / chemistry
  • Pseudomonas / classification*
  • Pseudomonas / genetics*
  • Pseudomonas / ultrastructure
  • Quinones / analysis
  • RNA, Bacterial / genetics
  • RNA, Ribosomal, 16S / genetics
  • Sequence Homology, Nucleic Acid

Substances

  • DNA, Bacterial
  • Quinones
  • RNA, Bacterial
  • RNA, Ribosomal, 16S