Cloning and expression of the human single copy homologue of the mouse zinc finger protein zfr

Gene. 2001 Sep 5;275(1):157-62. doi: 10.1016/s0378-1119(01)00620-5.

Abstract

A human homologue of the murine zinc finger protein zfr is transcriptionally induced in the Epstein-Barr virus-positive Burkitt lymphoma cell line Raji upon treatment with the granulocyte/macrophage lineage ganglioside IV(3)NeuAc-nLcOse(4)Cer. The gene was cloned by a rapid amplification of cDNA ends approach based on a cDNA clone. The resulting hzfr sequence is 3393 base pairs in length coding for a protein of 1057 amino acids. Sequence alignments between hzfr and zfr reveal an identity of 92% on the nucleotide level and an identity of 96.4% on the amino acid level, respectively. Based on Southern blot data hzfr can be addressed as a single copy gene. Tissue-specific expression was determined by semi-quantitative PCR of normalized cDNA populations from various human tissues with glyceraldehyde-3-phosphate dehydrogenase as an internal control. Highest levels of transcripts were found in brain. hzfr transcripts could not be detected in skeletal muscle.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Blotting, Southern
  • Cloning, Molecular
  • DNA / genetics
  • DNA, Complementary / chemistry
  • DNA, Complementary / genetics
  • Female
  • Gangliosides / pharmacology
  • Gene Dosage
  • Gene Expression
  • Gene Expression Regulation / drug effects
  • Humans
  • Mice
  • Molecular Sequence Data
  • RNA / genetics
  • RNA / metabolism
  • RNA-Binding Proteins / genetics*
  • Sequence Alignment
  • Sequence Analysis, DNA
  • Sequence Homology, Amino Acid
  • Tissue Distribution
  • Tumor Cells, Cultured

Substances

  • DNA, Complementary
  • Gangliosides
  • RNA-Binding Proteins
  • ZFR protein, human
  • ZFR protein, mouse
  • RNA
  • DNA

Associated data

  • GENBANK/AJ314790