Disruption of a gene encoding a putative gamma-butyrolactone-binding protein in Streptomyces tendae affects nikkomycin production

Appl Microbiol Biotechnol. 2001 Aug;56(3-4):414-9. doi: 10.1007/s002530100621.

Abstract

A 2.6-kb BamHI fragment from the genome of the wild-type, nikkomycin-producing strain of Streptomyces tendae ATCC 31160 was cloned and sequenced. This 2.6-kb BamHI fragment corresponds to the DNA site where transposon Tn4560 had inserted to create a nikkomycin-nonproducing mutant. A possible ORF of 660 nucleotides was found in this 2.6-kb BamHI fragment, in which the third base of each codon was either G or C in 92% of the codons. The deduced amino acid sequence coded by this ORF (TarA, tendae autoregulator receptor) shows strong homology with several Gamma-butyrolactone-binding proteins that negatively regulate antibiotic production in other streptomycetes and have a helix-turn-helix DNA-binding motif. A portion (179 nucleotides) of tarA that encodes the helix-turn-helix motif was replaced with ermE, and wild-type S. tendae was transformed with this construct borne in pDH5, a gene-disruption vector. Southern hybridization indicated that ermE had inserted in the 2.6-kb BamHI region in one isolate that is erythromycin resistant. Northern hybridization indicated that tarA disruption significantly increased the amount of disrupted-tarA mRNA. This suggests that TarA negatively regulates its own synthesis. Nikkomycin production by the tarA disruptant was delayed but reached the wild-type level after longer incubation in production medium.

MeSH terms

  • 4-Butyrolactone / metabolism*
  • Amino Acid Sequence
  • Aminoglycosides*
  • Anti-Bacterial Agents / biosynthesis*
  • Bacterial Proteins / genetics*
  • Bacterial Proteins / metabolism
  • Base Sequence
  • DNA Transposable Elements / genetics
  • DNA-Binding Proteins / genetics*
  • DNA-Binding Proteins / metabolism
  • Deoxyribonuclease BamHI / metabolism
  • Gene Deletion*
  • Gene Expression Regulation, Bacterial*
  • Molecular Sequence Data
  • Open Reading Frames / genetics
  • Sequence Analysis, DNA
  • Streptomyces / genetics
  • Streptomyces / metabolism*

Substances

  • Aminoglycosides
  • Anti-Bacterial Agents
  • Bacterial Proteins
  • DNA Transposable Elements
  • DNA-Binding Proteins
  • nikkomycin
  • Deoxyribonuclease BamHI
  • 4-Butyrolactone

Associated data

  • GENBANK/AF156161