Crystal structure of the complex of plasminogen activator inhibitor 2 with a peptide mimicking the reactive center loop

J Biol Chem. 2001 Nov 16;276(46):43374-82. doi: 10.1074/jbc.M103021200. Epub 2001 Aug 23.

Abstract

The structure of the serpin, plasminogen activator inhibitor type-2 (PAI-2), in a complex with a peptide mimicking its reactive center loop (RCL) has been determined at 1.6-A resolution. The structure shows the relaxed state serpin structure with a prominent six-stranded beta-sheet. Clear electron density is seen for all residues in the peptide. The P1 residue of the peptide binds to a well defined pocket at the base of PAI-2 that may be important in determining the specificity of protease inhibition. The stressed-to-relaxed state (S --> R) transition in PAI-2 can be modeled as the relative motion between a quasirigid core domain and a smaller segment comprising helix hF and beta-strands s1A, s2A, and s3A. A comparison of the Ramachandran plots of the stressed and relaxed state PAI-2 structures reveals the location of several hinge regions connecting these two domains. The hinge regions cluster in three locations on the structure, ensuring a cooperative S --> R transition. We hypothesize that the hinge formed by the conserved Gly(206) on beta-strand s3A in the breach region of PAI-2 effects the S --> R transition by altering its backbone torsion angles. This torsional change is due to the binding of the P14 threonine of the RCL to the open breach region of PAI-2.

MeSH terms

  • Crystallography, X-Ray*
  • Electrons
  • Escherichia coli / metabolism
  • Gene Deletion
  • Glycine / chemistry
  • Humans
  • Models, Molecular
  • Mutation
  • Peptides / chemistry*
  • Plasminogen Activator Inhibitor 2 / chemistry*
  • Protein Binding
  • Protein Conformation
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / metabolism
  • Serpins / chemistry
  • Threonine / chemistry

Substances

  • Peptides
  • Plasminogen Activator Inhibitor 2
  • Recombinant Proteins
  • Serpins
  • Threonine
  • Glycine

Associated data

  • PDB/1JRR