De novo design and characterization of copper centers in synthetic four-helix-bundle proteins

J Am Chem Soc. 2001 Mar 14;123(10):2186-95. doi: 10.1021/ja001880k.

Abstract

The design and chemical synthesis of de novo metalloproteins on cellulose membranes with the structure of an antiparallel four-helix bundle is described. All possible combinations of three different sets of amphiphilic helices were assembled on cyclic peptide templates which were bound by a cleavable linker to the cellulose. In the hydrophobic interior, the four-helix bundle proteins carry a cysteine and several histidines at various positions for copper ligation. This approach was used successfully to synthesize, for the first time, copper proteins based on a four-helix bundle. UV-vis spectra monitored on the solid support showed ligation of copper(II) by about one-third out of the 96 synthesized proteins and tetrahedral complexes of cobalt(II) by most of these proteins. Three of the most stable copper-binding proteins were synthesized in solution and their structural properties analyzed by spectroscopic methods. Circular dichroism, one-dimensional NMR, and size-exclusion chromatography indicate a folding into a compact state containing a high degree of secondary structure with a reasonably ordered hydrophobic core. They displayed UV-vis absorption, resonance Raman, and EPR spectra intermediate between those of type 1 and type 2 copper centers. The present approach provides a sound basis for further optimizing the copper binding and its functional properties by using combinatorial protein chemistry guided by rational principles.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites
  • Chromatography, Gel
  • Circular Dichroism
  • Copper / metabolism*
  • Electron Spin Resonance Spectroscopy
  • Magnetic Resonance Spectroscopy
  • Proteins / chemical synthesis*
  • Proteins / chemistry
  • Spectrophotometry, Ultraviolet
  • Spectrum Analysis, Raman

Substances

  • Proteins
  • Copper