The main purpose of this research is to show the usefulness of the 230Th/232Th activity ratios as a chronological marker that can be helpful in the dating of sediment cores collected from an estuarine system located in the south west of Spain highly polluted by wastes from fertilizer plants. These wastes, being released for 30 years, and enriched in radionuclides from the uranium series including 210Pb, invalidate the application of the 210Pb dating technique in full extent to the sediment cores collected in this estuary. However, the evaluation and the interpretation of both 210Pb and 230Th/232Th profiles allows the determination of average sedimentation rates in different parts of the cores, contaminated and noncontaminated zone, that agree in the case analysed in this research. Through this approach, a confident chronology covering the last century, which is essential to analyse and reconstruct the historical evolution of other pollutants in this heavily contaminated system can be established.