Transcriptional regulation at a distance in bacteria

Curr Opin Microbiol. 2001 Apr;4(2):138-44. doi: 10.1016/s1369-5274(00)00179-x.

Abstract

Transcriptional enhancers are cis-acting DNA elements that are binding sites for regulatory proteins and function at large distances from promoter elements to stimulate transcription. Once thought to be unique to eukaryotes, enhancer-like elements have been discovered in a wide variety of bacteria. The regulatory proteins that bind to these bacterial enhancers must contact RNA polymerase to activate transcription. In principle, interactions between bacterial enhancer-binding proteins and RNA polymerase can occur by either DNA looping or tracking of the enhancer-binding protein along the DNA. Paradigms for each of these methods are found in bacterial systems. Activators of sigma(54)-RNA polymerase holoenzyme contact polymerase by DNA looping, while bacteriophage T4 gp45 functions as a sliding clamp that tracks along DNA until it engages RNA polymerase. Significant advances have been made over the last few years towards understanding the mechanisms by which bacterial enhancer-binding proteins activate transcription, but important aspects of these mechanisms are still poorly defined.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.
  • Review

MeSH terms

  • Amino Acid Sequence
  • DNA-Binding Proteins / genetics*
  • DNA-Directed RNA Polymerases / metabolism
  • Enhancer Elements, Genetic
  • Gene Expression Regulation, Bacterial*
  • Molecular Sequence Data
  • RNA Polymerase Sigma 54
  • Sigma Factor / metabolism
  • Transcription Factors
  • Transcription, Genetic

Substances

  • DNA-Binding Proteins
  • Sigma Factor
  • Transcription Factors
  • DNA-Directed RNA Polymerases
  • RNA Polymerase Sigma 54