Expression sequence tag-specific full-length cDNA cloning: actin cDNAs

Gene. 2001 Jan 24;263(1-2):265-72. doi: 10.1016/s0378-1119(00)00559-x.

Abstract

Current strategies for cDNA cloning are based on construction of cDNA libraries and colony screening. The process of obtaining a full-length cDNA clone can be highly time and labor intensive. Using the human actin gene as a model target cDNA, we have developed an RNA-capture method for rapid cloning of full-length cDNAs. The approach involves the capture of mRNA with expressed sequence tag (EST)-derived, biotin labeled antisense "capture" primers and streptavidin-coated magnetic beads. Full-length cDNA is then synthesized from purified EST-specific mRNA and cloned directly into plasmid vectors. The results of using beta-actin-based capture primers on cytoplasmic RNA were the isolation of both beta- and gamma-actin cDNA clones. Of the 16 actin-specific cDNA clones analyzed, 15 (93%) were full-length. This approach for cloning full-length cDNAs from available ESTs or partial cDNA sequences will facilitate a more rapid and efficient characterization of gene structure and function.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Actins / genetics
  • Base Sequence
  • Cloning, Molecular / methods*
  • Cystic Fibrosis Transmembrane Conductance Regulator / genetics
  • DNA Primers
  • DNA, Complementary / genetics*
  • Expressed Sequence Tags*
  • Humans
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism
  • Research Design

Substances

  • Actins
  • CFTR protein, human
  • DNA Primers
  • DNA, Complementary
  • RNA, Messenger
  • Cystic Fibrosis Transmembrane Conductance Regulator