Molecular characterization of strains of Human herpesvirus 8 from Japan, Argentina and Kuwait

J Gen Virol. 2001 Mar;82(Pt 3):499-506. doi: 10.1099/0022-1317-82-3-499.

Abstract

Current genotyping systems for Human herpesvirus 8 (HHV-8) are based on the highly variable gene encoding the K1 glycoprotein. Most strains collected worldwide cluster into two subtypes (I/A and II/C). Sequenced African strains have belonged to subtypes I/A and IV/B. Members of all three of these subtypes can have either the M or P allele at the right-hand side (RHS) of the genome. Strains obtained predominantly from aboriginal or relatively isolated populations have formed clades that branch at a distance from subtypes I/A and II/C, all being of the RHS P allele. The characterization is reported here of 16 Japanese, two Kuwaiti and five Argentine HHV-8 strains obtained from human immunodeficiency virus-infected and non-infected patients with Kaposi's sarcoma (KS), primary effusion lymphoma, multicentric Castleman's disease or renal transplants. K1 sequences of five Japanese, one Kuwaiti and two Argentine strains were identified as subtype I/A and eight Japanese, one Kuwaiti and three Argentine strains were subtype II/C. Three strains from elderly classic KS patients originally from Hokkaido, a northern Japanese island, were relatively closely related to strains of subtypes III/D and E. Consistent with previous observations, both the M and P alleles were identified at the RHS of subgroup I/A and II/C genomes; only the P allele was detected among the three Hokkaido strains. Distances among the Hokkaido strains were similar to the distance between subtypes I/A and II/C, suggesting that the Hokkaido strains may represent two distinct subtypes and that, as more strains are analysed, the currently recognized III/D subgroups will probably emerge as independent subtypes.

MeSH terms

  • AIDS-Related Opportunistic Infections / virology*
  • Adult
  • Aged
  • Aged, 80 and over
  • Argentina
  • Base Sequence
  • DNA, Viral
  • Female
  • Genetic Variation
  • Glycoproteins / classification
  • Glycoproteins / genetics*
  • Herpesvirus 8, Human / classification
  • Herpesvirus 8, Human / genetics*
  • Herpesvirus 8, Human / isolation & purification
  • Humans
  • Japan
  • Kuwait
  • Male
  • Middle Aged
  • Molecular Sequence Data
  • Phylogeny
  • Sarcoma, Kaposi / virology*
  • Viral Proteins / classification
  • Viral Proteins / genetics*

Substances

  • DNA, Viral
  • Glycoproteins
  • K1 protein, Human herpesvirus 8
  • Viral Proteins

Associated data

  • GENBANK/AF274308
  • GENBANK/AF274309
  • GENBANK/AF278832
  • GENBANK/AF278833
  • GENBANK/AF278834
  • GENBANK/AF278835
  • GENBANK/AF278836
  • GENBANK/AF278837
  • GENBANK/AF278838
  • GENBANK/AF278839
  • GENBANK/AF278840
  • GENBANK/AF278841
  • GENBANK/AF278842
  • GENBANK/AF278843
  • GENBANK/AF278844
  • GENBANK/AF278845
  • GENBANK/AF278846
  • GENBANK/AF278847
  • GENBANK/AF278848
  • GENBANK/AF278849
  • GENBANK/AF278850
  • GENBANK/AF278851
  • GENBANK/AF278852
  • GENBANK/AF278853
  • GENBANK/AF278854
  • GENBANK/AF278855