HLA-DRB1 DNA sequencing based typing: an approach suitable for high throughput typing including unrelated bone marrow registry donors

Tissue Antigens. 2001 Jan;57(1):46-54. doi: 10.1034/j.1399-0039.2001.057001046.x.

Abstract

The HLA-DRB1 sequencing based typing strategies reported to date require separate amplifications of each sample with a series of group-specific primers followed by sequencing of any resulting polymerase chain reaction (PCR) products. Whilst this results in high resolution typing in the majority of cases, a number of unnecessary amplifications are performed. We report here a novel approach where amplification of the second exon of HLA-DRB1 is performed in a single tube for all alleles. Retrospective analysis of 642 consecutive Western Australian unrelated bone marrow registry donors has shown that this approach results in unambiguous typings in 71.1% of cases. Ambiguities can be readily resolved if necessary with a single additional sequencing reaction on the original PCR product.

MeSH terms

  • Alleles
  • Bone Marrow Transplantation / immunology*
  • Family
  • Gene Library
  • HLA-DR Antigens / genetics*
  • HLA-DRB1 Chains
  • Histocompatibility Testing / methods*
  • Humans
  • Polymerase Chain Reaction
  • Registries*
  • Retrospective Studies
  • Sensitivity and Specificity
  • Sequence Analysis, DNA / methods*
  • Tissue Donors*

Substances

  • HLA-DR Antigens
  • HLA-DRB1 Chains