DNA-triplex stabilizing properties of 8-aminoguanine

Nucleic Acids Res. 2000 Nov 15;28(22):4531-9. doi: 10.1093/nar/28.22.4531.

Abstract

A DNA-triplex stabilizing purine (8-aminoguanine) is designed based on molecular modeling and synthesized. The substitution of guanine by 8-aminoguanine largely stabilizes the triplex both at neutral and acidic pH, as suggested by molecular dynamics and thermodynamic integration calculations, and demonstrated by melting experiments. NMR experiments confirm the triplex-stabilizing properties of 8-aminoguanine and demonstrate that few changes are found in the structure of the triplex due to the presence of this modified base.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cytosine / chemistry
  • DNA / chemistry*
  • DNA / genetics
  • Guanine / analogs & derivatives*
  • Guanine / chemistry*
  • Magnetic Resonance Spectroscopy / methods
  • Models, Molecular
  • Mutation
  • Nucleic Acid Conformation*
  • Nucleic Acid Denaturation
  • Structure-Activity Relationship
  • Thermodynamics

Substances

  • 8-aminoguanine
  • Guanine
  • Cytosine
  • DNA