Molecular evolution of a type 1 wild-vaccine poliovirus recombinant during widespread circulation in China

J Virol. 2000 Dec;74(23):11153-61. doi: 10.1128/jvi.74.23.11153-11161.2000.

Abstract

Type 1 wild-vaccine recombinant polioviruses were isolated from poliomyelitis patients in China from 1991 to 1993. We compared the sequences of 34 recombinant isolates over the 1,353-nucleotide (nt) genomic interval (nt 2480 to 3832) encoding the major capsid protein, VP1, and the protease, 2A. All recombinants had a 367-nt block of sequence (nt 3271 to 3637) derived from the Sabin 1 oral poliovirus vaccine strain spanning the 3'-terminal sequences of VP1 (115 nt) and the 5' half of 2A (252 nt). The remaining VP1 sequences were closely (up to 99.5%) related to those of a major genotype of wild type 1 poliovirus endemic to China up to 1994. In contrast, the non-vaccine-derived sequences at the 3' half of 2A were more distantly related (<90% nucleotide sequence match) to those of other contemporary wild polioviruses from China. The vaccine-derived sequences of the earliest (April 1991) isolates completely matched those of Sabin 1. Later isolates diverged from the early isolates primarily by accumulation of synonymous base substitutions (at a rate of approximately 3.7 x 10(-2) substitutions per synonymous site per year) over the entire VP1-2A interval. Distinct evolutionary lineages were found in different Chinese provinces. From the combined epidemiologic and evolutionary analyses, we propose that the recombinant virus arose during mixed infection of a single individual in northern China in early 1991 and that its progeny spread by multiple independent chains of transmission into some of the most populous areas of China within a year of the initiating infection.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Base Sequence
  • Biological Evolution
  • Capsid / genetics*
  • Capsid Proteins
  • Cysteine Endopeptidases / genetics*
  • Molecular Sequence Data
  • Poliovirus / genetics*
  • Poliovirus / immunology
  • Recombination, Genetic*
  • Viral Proteins*

Substances

  • Capsid Proteins
  • VP1 protein, Poliovirus
  • Viral Proteins
  • Cysteine Endopeptidases
  • picornain 2A, Picornavirus