This study investigates in detail the finite-size scaling of the two-dimensional irrationally frustrated XY model. By means of Monte Carlo simulations with entropic sampling, we examine the size dependence of the specific heat, and find remarkable deviation from the conventional finite-size scaling theory, which reveals novel intrinsic finite-size effects. Relaxation dynamics of the system is also considered, and, correspondingly, finite-size scaling of the relaxation time is examined, again giving evidence for the intrinsic finite-size effects and suggesting a zero-temperature glass transition.