Rapid fold and structure determination of the archaeal translation elongation factor 1beta from Methanobacterium thermoautotrophicum

J Biomol NMR. 2000 Jul;17(3):187-94. doi: 10.1023/a:1008363304977.

Abstract

The tertiary fold of the elongation factor, aEF-1beta, from Methanobacterium thermoautotrophicum was determined in a high-throughput fashion using a minimal set of NMR experiments. NMR secondary structure prediction, deuterium exchange experiments and the analysis of chemical shift perturbations were combined to identify the protein fold as an alpha-beta sandwich typical of many RNA binding proteins including EF-G. Following resolution of the tertiary fold, a high resolution structure of aEF-1beta was determined using heteronuclear and homonuclear NMR experiments and a semi-automated NOESY assignment strategy. Analysis of the aEF-1beta structure revealed close similarity to its human analogue, eEF-1beta. In agreement with studies on EF-Ts and human EF-1beta, a functional mechanism for nucleotide exchange is proposed wherein Phe46 on an exposed loop acts as a lever to eject GDP from the associated elongation factor G-protein, aEF-1alpha. aEF-1beta was also found to bind calcium in the groove between helix alpha2 and strand beta4. This novel feature was not observed previously and may serve a structural function related to protein stability or may play a functional role in archaeal protein translation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Archaeal Proteins / chemistry*
  • Archaeal Proteins / isolation & purification
  • Archaeal Proteins / metabolism
  • Calcium-Binding Proteins / chemistry
  • Humans
  • Methanobacterium / chemistry*
  • Methanobacterium / metabolism
  • Models, Molecular
  • Nuclear Magnetic Resonance, Biomolecular*
  • Peptide Elongation Factor 1 / chemistry*
  • Peptide Elongation Factor 1 / isolation & purification
  • Peptide Elongation Factor 1 / metabolism
  • Protein Folding
  • Protein Structure, Secondary*
  • Recombinant Fusion Proteins / chemistry

Substances

  • Archaeal Proteins
  • Calcium-Binding Proteins
  • Peptide Elongation Factor 1
  • Recombinant Fusion Proteins