Mechanistic study of beta-xylosidase from Trichoderma koningii G-39

J Biochem. 2000 Feb;127(2):315-20. doi: 10.1093/oxfordjournals.jbchem.a022609.

Abstract

The catalytic mechanism of the beta-xylosidase purified from the culture filtrate of Trichoderma koningii G-39 was investigated. By NMR spectroscopy, the stereochemistry of the enzyme catalyzing the hydrolysis of 2,4-dinitrophenyl and p-nitrophenyl-beta-D-xylosides was found unequivocally to involve retention of the anomeric configuration. Based on the k(cat) values of a series of arylxylosides with leaving group pK(a)s in the range of 4-10, an extended Bronsted plot was constructed with a slope (beta(lg)) near zero. Enzymatic hydrolysis of aryl-beta-D-xylosides in acetate buffer (pH 4.0) containing 3 or 5% methanol showed a constant product ratio (methylxyloside/xylose), indicating the presence of a common intermediate, probably the xylosyl-enzyme intermediate. In the presence of DTT, the k(cat) values of p-cyanophenyl-beta-D-xylopyranoside and p-nitrophenyl-beta-D-xylopyranoside increased greatly. A two-step mechanism involving the formation and breakdown of the xylosyl-enzyme intermediate was therefore proposed. The rate-limiting step is the breakdown of the intermediate. The secondary deuterium kinetic isotope effect (k(H)/k(D)) measured for 2,4-dinitrophenyl-beta-D-xyloside was 1.02+/-0.01, suggesting that the transition state for breakdown of the xylosyl-enzyme intermediate is S(N)2-like.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding, Competitive
  • Deuterium
  • Dithiothreitol / pharmacology
  • Enzyme Inhibitors / pharmacology
  • Gluconates / pharmacology
  • Glycosides / metabolism
  • Kinetics
  • Lactones
  • Magnetic Resonance Spectroscopy
  • Mechanics
  • Pyrones / pharmacology
  • Stereoisomerism
  • Substrate Specificity
  • Trichoderma / enzymology*
  • Xylose / analogs & derivatives
  • Xylose / pharmacology
  • Xylosidases / antagonists & inhibitors
  • Xylosidases / chemistry*
  • Xylosidases / metabolism*

Substances

  • Enzyme Inhibitors
  • Gluconates
  • Glycosides
  • Lactones
  • Pyrones
  • delta-xylonolactone
  • xylosides
  • Xylose
  • Deuterium
  • Xylosidases
  • exo-1,4-beta-D-xylosidase
  • Dithiothreitol
  • beta-glucono-1,5-lactone