HbpR, a new member of the XylR/DmpR subclass within the NtrC family of bacterial transcriptional activators, regulates expression of 2-hydroxybiphenyl metabolism in Pseudomonas azelaica HBP1

J Bacteriol. 2000 Jan;182(2):405-17. doi: 10.1128/JB.182.2.405-417.2000.

Abstract

The regulation of 2-hydroxybiphenyl and 2,2'-dihydroxybiphenyl degradation in Pseudomonas azelaica is mediated by the regulatory gene, hbpR. The hbpR gene encodes a 63-kDa protein belonging to the NtrC family of prokaryotic transcriptional activators and having the highest homology to members of the XylR/DmpR subclass. Disruption of the hbpR gene in P. azelaica and complementation in trans showed that the HbpR protein was the key regulator for 2-hydroxybiphenyl metabolism. Induction experiments with P. azelaica and Escherichia coli containing luxAB-based transcriptional fusions revealed that HbpR activates transcription from a promoter (P(hbpC)) in front of the first gene for 2-hydroxybiphenyl degradation, hbpC, and that 2-hydroxybiphenyl itself is the direct effector for HbpR-mediated activation. Of several compounds tested, only the pathway substrates 2-hydroxybiphenyl and 2,2'-dihydroxybiphenyl and structural analogs like 2-aminobiphenyl and 2-hydroxybiphenylmethane were effectors for HbpR activation. HbpR is therefore, to our knowledge, the first regulator of the XylR/DmpR class that recognizes biaromatic but not monoaromatic structures. Analysis of a spontaneously occurring mutant, P. azelaica HBP1 Prp, which can grow with the non-wild-type effector 2-propylphenol, revealed a single mutation in the hbpR gene (T613C) leading to a Trp-->Arg substitution at amino acid residue 205. P. azelaica HBP1 derivative strains without a functional hbpR gene constitutively expressed the genes for 2-hydroxybiphenyl degradation when complemented in trans with the hbpR-T613C gene. This suggests the importance of this residue, which is conserved among all members of the XylR/DmpR subclass, for interdomain repression.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Bacterial Proteins / genetics*
  • Biphenyl Compounds / metabolism*
  • DNA-Binding Proteins / genetics*
  • Escherichia coli Proteins
  • Gene Expression Regulation, Bacterial*
  • Molecular Sequence Data
  • Mutation
  • PII Nitrogen Regulatory Proteins
  • Phenols / metabolism
  • Pseudomonas / genetics*
  • Sequence Alignment
  • Sequence Analysis, DNA
  • Trans-Activators / genetics*
  • Transcription Factors / genetics*

Substances

  • Bacterial Proteins
  • Biphenyl Compounds
  • DNA-Binding Proteins
  • Escherichia coli Proteins
  • HbpR protein, Pseudomonas azelaica
  • PII Nitrogen Regulatory Proteins
  • Phenols
  • Trans-Activators
  • Transcription Factors
  • glnG protein, E coli
  • 2-propylphenol
  • 2-phenylphenol