Repairing the sickle cell mutation. I. Specific covalent binding of a photoreactive third strand to the mutated base pair

J Biol Chem. 1999 Jul 30;274(31):21763-8. doi: 10.1074/jbc.274.31.21763.

Abstract

A DNA third strand with a 3'-psoralen substituent was designed to form a triplex with the sequence downstream of the T.A mutant base pair of the human sickle cell beta-globin gene. Triplex-mediated psoralen modification of the mutant T residue was sought as an approach to gene repair. The 24-nucleotide purine-rich target sequence switches from one strand to the other and has four pyrimidine interruptions. Therefore, a third strand sequence favorable to two triplex motifs was used, one parallel and the other antiparallel to it. To cope with the pyrimidine interruptions, which weaken third strand binding, 5-methylcytosine and 5-propynyluracil were used in the third strand. Further, a six residue "hook" complementary to an overhang of a linear duplex target was added to the 5'-end of the third strand via a T(4) linker. In binding to the overhang by Watson-Crick pairing, the hook facilitates triplex formation. This third strand also binds specifically to the target within a supercoiled plasmid. The psoralen moiety at the 3'-end of the third strand forms photoadducts to the targeted T with high efficiency. Such monoadducts are known to preferentially trigger reversion of the mutation by DNA repair enzymes.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Adenine
  • Base Pairing
  • Base Sequence
  • Binding Sites
  • DNA Footprinting
  • Furocoumarins*
  • Globins / genetics*
  • Hemoglobin, Sickle / genetics*
  • Humans
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Oligodeoxyribonucleotides / chemical synthesis
  • Oligodeoxyribonucleotides / chemistry
  • Point Mutation*
  • Templates, Genetic
  • Thymine

Substances

  • Furocoumarins
  • Hemoglobin, Sickle
  • Oligodeoxyribonucleotides
  • Globins
  • Adenine
  • Thymine