van der Vaart A - Search Results

1

Rational discovery of antimetastatic agents targeting the intrinsically disordered region of MBD2.

Kim MY, Na I, Kim JS, Son SH, Choi S, Lee SE, Kim JH, Jang K, Alterovitz G, Chen Y, van der Vaart A, Won HS, Uversky VN, Kim CG. Kim MY, et al. Among authors: van der vaart a. Sci Adv. 2019 Nov 20;5(11):eaav9810. doi: 10.1126/sciadv.aav9810. eCollection 2019 Nov. Sci Adv. 2019. PMID: 31799386 Free PMC article.

2

DNA binding and bending by Sac7d is stepwise.

Spiriti J, van der Vaart A. Spiriti J, et al. Among authors: van der vaart a. Chembiochem. 2013 Aug 19;14(12):1434-7. doi: 10.1002/cbic.201300264. Epub 2013 Jul 12. Chembiochem. 2013. PMID: 23853062

3

Free energy simulation of helical transitions.

Ma N, Chung YH, van der Vaart A. Ma N, et al. Among authors: van der vaart a. J Comput Chem. 2013 Mar 30;34(8):640-5. doi: 10.1002/jcc.23174. Epub 2012 Nov 5. J Comput Chem. 2013. PMID: 23125002

4

One-Bead-Two-Compound Thioether Bridged Macrocyclic γ-AApeptide Screening Library against EphA2.

Shi Y, Challa S, Sang P, She F, Li C, Gray GM, Nimmagadda A, Teng P, Odom T, Wang Y, van der Vaart A, Li Q, Cai J. Shi Y, et al. Among authors: van der vaart a. J Med Chem. 2017 Nov 22;60(22):9290-9298. doi: 10.1021/acs.jmedchem.7b01280. Epub 2017 Nov 14. J Med Chem. 2017. PMID: 29111705 Free PMC article.

5

Orthogonal Halogen-Bonding-Driven 3D Supramolecular Assembly of Right-Handed Synthetic Helical Peptides.

Teng P, Gray GM, Zheng M, Singh S, Li X, Wojtas L, van der Vaart A, Cai J. Teng P, et al. Among authors: van der vaart a. Angew Chem Int Ed Engl. 2019 Jun 3;58(23):7778-7782. doi: 10.1002/anie.201903259. Epub 2019 Apr 30. Angew Chem Int Ed Engl. 2019. PMID: 30957356 Free PMC article.

6

Modulation of protein stability by O-glycosylation in a designed Gc-MAF analog.

Spiriti J, Bogani F, van der Vaart A, Ghirlanda G. Spiriti J, et al. Among authors: van der vaart a. Biophys Chem. 2008 May;134(3):157-67. doi: 10.1016/j.bpc.2008.02.005. Epub 2008 Feb 21. Biophys Chem. 2008. PMID: 18329161

7

Mechanism of the calcium-induced trans-cis isomerization of a non-prolyl peptide bond in Clostridium histolyticum collagenase.

Spiriti J, van der Vaart A. Spiriti J, et al. Among authors: van der vaart a. Biochemistry. 2010 Jun 29;49(25):5314-20. doi: 10.1021/bi1007047. Biochemistry. 2010. PMID: 20499930

8

Cy3-DNA stacking interactions strongly depend on the identity of the terminal basepair.

Spiriti J, Binder JK, Levitus M, van der Vaart A. Spiriti J, et al. Among authors: van der vaart a. Biophys J. 2011 Feb 16;100(4):1049-57. doi: 10.1016/j.bpj.2011.01.014. Biophys J. 2011. PMID: 21320450 Free PMC article.

9

RevErbα preferentially deforms DNA by induced fit.

Chung YH, van der Vaart A. Chung YH, et al. Among authors: van der vaart a. Chembiochem. 2014 Mar 21;15(5):643-6. doi: 10.1002/cbic.201300557. Chembiochem. 2014. PMID: 24677802

10

Coupled binding-bending-folding: The complex conformational dynamics of protein-DNA binding studied by atomistic molecular dynamics simulations.

van der Vaart A. van der Vaart A. Biochim Biophys Acta. 2015 May;1850(5):1091-1098. doi: 10.1016/j.bbagen.2014.08.009. Epub 2014 Aug 23. Biochim Biophys Acta. 2015. PMID: 25161164 Review.

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