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Pitfalls in machine learning-based assessment of tumor-infiltrating lymphocytes in breast cancer: A report of the International Immuno-Oncology Biomarker Working Group on Breast Cancer.
Thagaard J, Broeckx G, Page DB, Jahangir CA, Verbandt S, Kos Z, Gupta R, Khiroya R, Abduljabbar K, Acosta Haab G, Acs B, Akturk G, Almeida JS, Alvarado-Cabrero I, Amgad M, Azmoudeh-Ardalan F, Badve S, Baharun NB, Balslev E, Bellolio ER, Bheemaraju V, Blenman KR, Botinelly Mendonça Fujimoto L, Bouchmaa N, Burgues O, Chardas A, Chon U Cheang M, Ciompi F, Cooper LA, Coosemans A, Corredor G, Dahl AB, Dantas Portela FL, Deman F, Demaria S, Doré Hansen J, Dudgeon SN, Ebstrup T, Elghazawy M, Fernandez-Martín C, Fox SB, Gallagher WM, Giltnane JM, Gnjatic S, Gonzalez-Ericsson PI, Grigoriadis A, Halama N, Hanna MG, Harbhajanka A, Hart SN, Hartman J, Hauberg S, Hewitt S, Hida AI, Horlings HM, Husain Z, Hytopoulos E, Irshad S, Janssen EA, Kahila M, Kataoka TR, Kawaguchi K, Kharidehal D, Khramtsov AI, Kiraz U, Kirtani P, Kodach LL, Korski K, Kovács A, Laenkholm AV, Lang-Schwarz C, Larsimont D, Lennerz JK, Lerousseau M, Li X, Ly A, Madabhushi A, Maley SK, Manur Narasimhamurthy V, Marks DK, McDonald ES, Mehrotra R, Michiels S, Minhas FUAA, Mittal S, Moore DA, Mushtaq S, Nighat H, Papathomas T, Penault-Llorca F, Perera RD, Pinard CJ, Pinto-Cardenas JC, Pruneri G, Pusztai L, Rahman A, Rajpoot NM, … See abstract for full author list ➔ Thagaard J, et al. Among authors: van diest pj, van der laak j. J Pathol. 2023 Aug;260(5):498-513. doi: 10.1002/path.6155. Epub 2023 Aug 23. J Pathol. 2023. PMID: 37608772 Free PMC article. Review.
A survey on deep learning in medical image analysis.
Litjens G, Kooi T, Bejnordi BE, Setio AAA, Ciompi F, Ghafoorian M, van der Laak JAWM, van Ginneken B, Sánchez CI. Litjens G, et al. Med Image Anal. 2017 Dec;42:60-88. doi: 10.1016/j.media.2017.07.005. Epub 2017 Jul 26. Med Image Anal. 2017. PMID: 28778026 Review.
Deep learning assisted mitotic counting for breast cancer.
Balkenhol MCA, Tellez D, Vreuls W, Clahsen PC, Pinckaers H, Ciompi F, Bult P, van der Laak JAWM. Balkenhol MCA, et al. Lab Invest. 2019 Nov;99(11):1596-1606. doi: 10.1038/s41374-019-0275-0. Epub 2019 Jun 20. Lab Invest. 2019. PMID: 31222166 Free article.
Computational pathology definitions, best practices, and recommendations for regulatory guidance: a white paper from the Digital Pathology Association.
Abels E, Pantanowitz L, Aeffner F, Zarella MD, van der Laak J, Bui MM, Vemuri VN, Parwani AV, Gibbs J, Agosto-Arroyo E, Beck AH, Kozlowski C. Abels E, et al. Among authors: van der laak j. J Pathol. 2019 Nov;249(3):286-294. doi: 10.1002/path.5331. Epub 2019 Sep 3. J Pathol. 2019. PMID: 31355445 Free PMC article. Review.
Learning to detect lymphocytes in immunohistochemistry with deep learning.
Swiderska-Chadaj Z, Pinckaers H, van Rijthoven M, Balkenhol M, Melnikova M, Geessink O, Manson Q, Sherman M, Polonia A, Parry J, Abubakar M, Litjens G, van der Laak J, Ciompi F. Swiderska-Chadaj Z, et al. Among authors: van rijthoven m, van der laak j. Med Image Anal. 2019 Dec;58:101547. doi: 10.1016/j.media.2019.101547. Epub 2019 Aug 21. Med Image Anal. 2019. PMID: 31476576
No pixel-level annotations needed.
van der Laak J, Ciompi F, Litjens G. van der Laak J, et al. Nat Biomed Eng. 2019 Nov;3(11):855-856. doi: 10.1038/s41551-019-0472-6. Nat Biomed Eng. 2019. PMID: 31624355 No abstract available.
Assessment of individual tumor buds using keratin immunohistochemistry: moderate interobserver agreement suggests a role for machine learning.
Bokhorst JM, Blank A, Lugli A, Zlobec I, Dawson H, Vieth M, Rijstenberg LL, Brockmoeller S, Urbanowicz M, Flejou JF, Kirsch R, Ciompi F, van der Laak JAWM, Nagtegaal ID. Bokhorst JM, et al. Among authors: van der laak jawm. Mod Pathol. 2020 May;33(5):825-833. doi: 10.1038/s41379-019-0434-2. Epub 2019 Dec 16. Mod Pathol. 2020. PMID: 31844269 Free PMC article.
Correction to: Assessment of individual tumor buds using keratin immunohistochemistry: moderate interobserver agreement suggests a role for machine learning.
Bokhorst JM, Blank A, Lugli A, Zlobec I, Dawson H, Vieth M, Rijstenberg LL, Brockmoeller S, Urbanowicz M, Flejou JF, Kirsch R, Ciompi F, van der Laak JAWM, Nagtegaal ID. Bokhorst JM, et al. Among authors: van der laak jawm. Mod Pathol. 2020 May;33(5):981. doi: 10.1038/s41379-019-0450-2. Mod Pathol. 2020. PMID: 31900432 Free PMC article.
187 results