van Dijk B - Search Results

1

Towards evolutionary predictions: Current promises and challenges.

Wortel MT, Agashe D, Bailey SF, Bank C, Bisschop K, Blankers T, Cairns J, Colizzi ES, Cusseddu D, Desai MM, van Dijk B, Egas M, Ellers J, Groot AT, Heckel DG, Johnson ML, Kraaijeveld K, Krug J, Laan L, Lässig M, Lind PA, Meijer J, Noble LM, Okasha S, Rainey PB, Rozen DE, Shitut S, Tans SJ, Tenaillon O, Teotónio H, de Visser JAGM, Visser ME, Vroomans RMA, Werner GDA, Wertheim B, Pennings PS. Wortel MT, et al. Among authors: van dijk b. Evol Appl. 2022 Dec 9;16(1):3-21. doi: 10.1111/eva.13513. eCollection 2023 Jan. Evol Appl. 2022. PMID: 36699126 Free PMC article. Review.

2

Trusting the hand that feeds: microbes evolve to anticipate a serial transfer protocol as individuals or collectives.

van Dijk B, Meijer J, Cuypers TD, Hogeweg P. van Dijk B, et al. BMC Evol Biol. 2019 Nov 4;19(1):201. doi: 10.1186/s12862-019-1512-2. BMC Evol Biol. 2019. PMID: 31684861 Free PMC article.

3

Contingent evolution of alternative metabolic network topologies determines whether cross-feeding evolves.

Meijer J, van Dijk B, Hogeweg P. Meijer J, et al. Among authors: van dijk b. Commun Biol. 2020 Jul 29;3(1):401. doi: 10.1038/s42003-020-1107-x. Commun Biol. 2020. PMID: 32728180 Free PMC article.

4

Transposable elements promote the evolution of genome streamlining.

van Dijk B, Bertels F, Stolk L, Takeuchi N, Rainey PB. van Dijk B, et al. Philos Trans R Soc Lond B Biol Sci. 2022 Jan 17;377(1842):20200477. doi: 10.1098/rstb.2020.0477. Epub 2021 Nov 29. Philos Trans R Soc Lond B Biol Sci. 2022. PMID: 34839699 Free PMC article.

5

Evolution of genome fragility enables microbial division of labor.

Colizzi ES, van Dijk B, Merks RMH, Rozen DE, Vroomans RMA. Colizzi ES, et al. Among authors: van dijk b. Mol Syst Biol. 2023 Mar 9;19(3):e11353. doi: 10.15252/msb.202211353. Epub 2023 Feb 2. Mol Syst Biol. 2023. PMID: 36727665 Free PMC article.

6

Identifying and tracking mobile elements in evolving compost communities yields insights into the nanobiome.

van Dijk B, Buffard P, Farr AD, Giersdorf F, Meijer J, Dutilh BE, Rainey PB. van Dijk B, et al. ISME Commun. 2023 Aug 28;3(1):90. doi: 10.1038/s43705-023-00294-w. ISME Commun. 2023. PMID: 37640834 Free PMC article.

7

Slightly beneficial genes are retained by bacteria evolving DNA uptake despite selfish elements.

van Dijk B, Hogeweg P, Doekes HM, Takeuchi N. van Dijk B, et al. Elife. 2020 May 21;9:e56801. doi: 10.7554/eLife.56801. Elife. 2020. PMID: 32432548 Free PMC article.

8

In Silico Gene-Level Evolution Explains Microbial Population Diversity through Differential Gene Mobility.

van Dijk B, Hogeweg P. van Dijk B, et al. Genome Biol Evol. 2015 Dec 28;8(1):176-88. doi: 10.1093/gbe/evv255. Genome Biol Evol. 2015. PMID: 26710854 Free PMC article.

9

Can mobile genetic elements rescue genes from extinction?

van Dijk B. van Dijk B. Curr Genet. 2020 Dec;66(6):1069-1071. doi: 10.1007/s00294-020-01104-9. Epub 2020 Sep 3. Curr Genet. 2020. PMID: 32880674 Free PMC article. Review.

10

Nutrition or nature: using elementary flux modes to disentangle the complex forces shaping prokaryote pan-genomes.

Garza DR, von Meijenfeldt FAB, van Dijk B, Boleij A, Huynen MA, Dutilh BE. Garza DR, et al. Among authors: van dijk b. BMC Ecol Evol. 2022 Aug 16;22(1):101. doi: 10.1186/s12862-022-02052-3. BMC Ecol Evol. 2022. PMID: 35974327 Free PMC article.

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