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Cis- and trans-regulation in X inactivation.
van Bemmel JG, Mira-Bontenbal H, Gribnau J. van Bemmel JG, et al. Chromosoma. 2016 Mar;125(1):41-50. doi: 10.1007/s00412-015-0525-x. Epub 2015 Jul 22. Chromosoma. 2016. PMID: 26198462 Free PMC article. Review.
The bipartite TAD organization of the X-inactivation center ensures opposing developmental regulation of Tsix and Xist.
van Bemmel JG, Galupa R, Gard C, Servant N, Picard C, Davies J, Szempruch AJ, Zhan Y, Żylicz JJ, Nora EP, Lameiras S, de Wit E, Gentien D, Baulande S, Giorgetti L, Guttman M, Hughes JR, Higgs DR, Gribnau J, Heard E. van Bemmel JG, et al. Nat Genet. 2019 Jun;51(6):1024-1034. doi: 10.1038/s41588-019-0412-0. Epub 2019 May 27. Nat Genet. 2019. PMID: 31133748 Free PMC article.
A Conserved Noncoding Locus Regulates Random Monoallelic Xist Expression across a Topological Boundary.
Galupa R, Nora EP, Worsley-Hunt R, Picard C, Gard C, van Bemmel JG, Servant N, Zhan Y, El Marjou F, Johanneau C, Diabangouaya P, Le Saux A, Lameiras S, Pipoli da Fonseca J, Loos F, Gribnau J, Baulande S, Ohler U, Giorgetti L, Heard E. Galupa R, et al. Among authors: van bemmel jg. Mol Cell. 2020 Jan 16;77(2):352-367.e8. doi: 10.1016/j.molcel.2019.10.030. Epub 2019 Nov 20. Mol Cell. 2020. PMID: 31759823 Free PMC article.
Transcription Factor GATA4 Regulates Cell Type-Specific Splicing Through Direct Interaction With RNA in Human Induced Pluripotent Stem Cell-Derived Cardiac Progenitors.
Zhu L, Choudhary K, Gonzalez-Teran B, Ang YS, Thomas R, Stone NR, Liu L, Zhou P, Zhu C, Ruan H, Huang Y, Jin S, Pelonero A, Koback F, Padmanabhan A, Sadagopan N, Hsu A, Costa MW, Gifford CA, van Bemmel JG, Hüttenhain R, Vedantham V, Conklin BR, Black BL, Bruneau BG, Steinmetz L, Krogan NJ, Pollard KS, Srivastava D. Zhu L, et al. Among authors: van bemmel jg. Circulation. 2022 Sep 6;146(10):770-787. doi: 10.1161/CIRCULATIONAHA.121.057620. Epub 2022 Aug 8. Circulation. 2022. PMID: 35938400 Free PMC article.
Bayesian network analysis of targeting interactions in chromatin.
van Steensel B, Braunschweig U, Filion GJ, Chen M, van Bemmel JG, Ideker T. van Steensel B, et al. Among authors: van bemmel jg. Genome Res. 2010 Feb;20(2):190-200. doi: 10.1101/gr.098822.109. Epub 2009 Dec 9. Genome Res. 2010. PMID: 20007327 Free PMC article.
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