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Page 1
Sequential intrahost evolution and onward transmission of SARS-CoV-2 variants.
Gonzalez-Reiche AS, Alshammary H, Schaefer S, Patel G, Polanco J, Carreño JM, Amoako AA, Rooker A, Cognigni C, Floda D, van de Guchte A, Khalil Z, Farrugia K, Assad N, Zhang J, Alburquerque B; PARIS/PSP study group; Sominsky LA, Gleason C, Srivastava K, Sebra R, Ramirez JD, Banu R, Shrestha P, Krammer F, Paniz-Mondolfi A, Sordillo EM, Simon V, van Bakel H. Gonzalez-Reiche AS, et al. Among authors: van bakel h, van de guchte a. Nat Commun. 2023 Jun 3;14(1):3235. doi: 10.1038/s41467-023-38867-x. Nat Commun. 2023. PMID: 37270625 Free PMC article.
Whole-genome sequencing identifies emergence of a quinolone resistance mutation in a case of Stenotrophomonas maltophilia bacteremia.
Pak TR, Altman DR, Attie O, Sebra R, Hamula CL, Lewis M, Deikus G, Newman LC, Fang G, Hand J, Patel G, Wallach F, Schadt EE, Huprikar S, van Bakel H, Kasarskis A, Bashir A. Pak TR, et al. Among authors: van bakel h. Antimicrob Agents Chemother. 2015 Nov;59(11):7117-20. doi: 10.1128/AAC.01723-15. Epub 2015 Aug 31. Antimicrob Agents Chemother. 2015. PMID: 26324280 Free PMC article.
Genetic Basis of Emerging Vancomycin, Linezolid, and Daptomycin Heteroresistance in a Case of Persistent Enterococcus faecium Bacteremia.
Chacko KI, Sullivan MJ, Beckford C, Altman DR, Ciferri B, Pak TR, Sebra R, Kasarskis A, Hamula CL, van Bakel H. Chacko KI, et al. Among authors: van bakel h. Antimicrob Agents Chemother. 2018 Mar 27;62(4):e02007-17. doi: 10.1128/AAC.02007-17. Print 2018 Apr. Antimicrob Agents Chemother. 2018. PMID: 29339387 Free PMC article.
A Complete Genome Screening Program of Clinical Methicillin-Resistant Staphylococcus aureus Isolates Identifies the Origin and Progression of a Neonatal Intensive Care Unit Outbreak.
Sullivan MJ, Altman DR, Chacko KI, Ciferri B, Webster E, Pak TR, Deikus G, Lewis-Sandari M, Khan Z, Beckford C, Rendo A, Samaroo F, Sebra R, Karam-Howlin R, Dingle T, Hamula C, Bashir A, Schadt E, Patel G, Wallach F, Kasarskis A, Gibbs K, van Bakel H. Sullivan MJ, et al. Among authors: van bakel h. J Clin Microbiol. 2019 Nov 22;57(12):e01261-19. doi: 10.1128/JCM.01261-19. Print 2019 Dec. J Clin Microbiol. 2019. PMID: 31578260 Free PMC article.
Blurred Molecular Epidemiological Lines Between the Two Dominant Methicillin-Resistant Staphylococcus aureus Clones.
Dupper AC, Sullivan MJ, Chacko KI, Mishkin A, Ciferri B, Kumaresh A, Berbel Caban A, Oussenko I, Beckford C, Zeitouni NE, Sebra R, Hamula C, Smith M, Kasarskis A, Patel G, McBride RB, van Bakel H, Altman DR. Dupper AC, et al. Among authors: van bakel h. Open Forum Infect Dis. 2019 Jun 27;6(9):ofz302. doi: 10.1093/ofid/ofz302. eCollection 2019 Sep. Open Forum Infect Dis. 2019. PMID: 31660395 Free PMC article.
Epigenomic characterization of Clostridioides difficile finds a conserved DNA methyltransferase that mediates sporulation and pathogenesis.
Oliveira PH, Ribis JW, Garrett EM, Trzilova D, Kim A, Sekulovic O, Mead EA, Pak T, Zhu S, Deikus G, Touchon M, Lewis-Sandari M, Beckford C, Zeitouni NE, Altman DR, Webster E, Oussenko I, Bunyavanich S, Aggarwal AK, Bashir A, Patel G, Wallach F, Hamula C, Huprikar S, Schadt EE, Sebra R, van Bakel H, Kasarskis A, Tamayo R, Shen A, Fang G. Oliveira PH, et al. Among authors: van bakel h. Nat Microbiol. 2020 Jan;5(1):166-180. doi: 10.1038/s41564-019-0613-4. Epub 2019 Nov 25. Nat Microbiol. 2020. PMID: 31768029 Free PMC article.
Introductions and early spread of SARS-CoV-2 in the New York City area.
Gonzalez-Reiche AS, Hernandez MM, Sullivan MJ, Ciferri B, Alshammary H, Obla A, Fabre S, Kleiner G, Polanco J, Khan Z, Alburquerque B, van de Guchte A, Dutta J, Francoeur N, Melo BS, Oussenko I, Deikus G, Soto J, Sridhar SH, Wang YC, Twyman K, Kasarskis A, Altman DR, Smith M, Sebra R, Aberg J, Krammer F, García-Sastre A, Luksza M, Patel G, Paniz-Mondolfi A, Gitman M, Sordillo EM, Simon V, van Bakel H. Gonzalez-Reiche AS, et al. Among authors: van bakel h, van de guchte a. Science. 2020 Jul 17;369(6501):297-301. doi: 10.1126/science.abc1917. Epub 2020 May 29. Science. 2020. PMID: 32471856 Free PMC article.
The arrival and spread of SARS-CoV-2 in Colombia.
Ramírez JD, Florez C, Muñoz M, Hernández C, Castillo A, Gomez S, Rico A, Pardo L, Barros EC, Castañeda S, Ballesteros N, Martínez D, Vega L, Jaimes JE, Cruz-Saavedra L, Herrera G, Patiño LH, Teherán AA, Gonzalez-Reiche AS, Hernandez MM, Sordillo EM, Simon V, van Bakel H, Paniz-Mondolfi A. Ramírez JD, et al. Among authors: van bakel h. J Med Virol. 2021 Feb;93(2):1158-1163. doi: 10.1002/jmv.26393. Epub 2020 Aug 13. J Med Virol. 2021. PMID: 32761908 Free PMC article.
239 results