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Polyploid SNP Genotyping Using the MassARRAY System.
da Costa Lima Moraes A, Sforça DA, Mancini MC, Vigna BBZ, de Souza AP. da Costa Lima Moraes A, et al. Among authors: de souza ap. Methods Mol Biol. 2023;2638:93-113. doi: 10.1007/978-1-0716-3024-2_7. Methods Mol Biol. 2023. PMID: 36781637
De novo assembly and transcriptome analysis of contrasting sugarcane varieties.
Cardoso-Silva CB, Costa EA, Mancini MC, Balsalobre TW, Canesin LE, Pinto LR, Carneiro MS, Garcia AA, de Souza AP, Vicentini R. Cardoso-Silva CB, et al. Among authors: de souza ap. PLoS One. 2014 Feb 11;9(2):e88462. doi: 10.1371/journal.pone.0088462. eCollection 2014. PLoS One. 2014. PMID: 24523899 Free PMC article.
Leaf transcriptome of two highly divergent genotypes of Urochloa humidicola (Poaceae), a tropical polyploid forage grass adapted to acidic soils and temporary flooding areas.
Vigna BB, de Oliveira FA, de Toledo-Silva G, da Silva CC, do Valle CB, de Souza AP. Vigna BB, et al. Among authors: de oliveira fa, de toledo silva g, de souza ap. BMC Genomics. 2016 Nov 11;17(1):910. doi: 10.1186/s12864-016-3270-5. BMC Genomics. 2016. PMID: 27835957 Free PMC article.
GBS-based single dosage markers for linkage and QTL mapping allow gene mining for yield-related traits in sugarcane.
Balsalobre TW, da Silva Pereira G, Margarido GR, Gazaffi R, Barreto FZ, Anoni CO, Cardoso-Silva CB, Costa EA, Mancini MC, Hoffmann HP, de Souza AP, Garcia AA, Carneiro MS. Balsalobre TW, et al. Among authors: de souza ap. BMC Genomics. 2017 Jan 11;18(1):72. doi: 10.1186/s12864-016-3383-x. BMC Genomics. 2017. PMID: 28077090 Free PMC article.
Analysis of Three Sugarcane Homo/Homeologous Regions Suggests Independent Polyploidization Events of Saccharum officinarum and Saccharum spontaneum.
Vilela MM, Del Bem LE, Van Sluys MA, de Setta N, Kitajima JP, Cruz GM, Sforça DA, de Souza AP, Ferreira PC, Grativol C, Cardoso-Silva CB, Vicentini R, Vincentz M. Vilela MM, et al. Among authors: de setta n, de souza ap. Genome Biol Evol. 2017 Feb 1;9(2):266-278. doi: 10.1093/gbe/evw293. Genome Biol Evol. 2017. PMID: 28082603 Free PMC article.
Gene Duplication in the Sugarcane Genome: A Case Study of Allele Interactions and Evolutionary Patterns in Two Genic Regions.
Sforça DA, Vautrin S, Cardoso-Silva CB, Mancini MC, Romero-da Cruz MV, Pereira GDS, Conte M, Bellec A, Dahmer N, Fourment J, Rodde N, Van Sluys MA, Vicentini R, Garcia AAF, Forni-Martins ER, Carneiro MS, Hoffmann HP, Pinto LR, Landell MGA, Vincentz M, Berges H, de Souza AP. Sforça DA, et al. Among authors: de souza ap. Front Plant Sci. 2019 May 7;10:553. doi: 10.3389/fpls.2019.00553. eCollection 2019. Front Plant Sci. 2019. PMID: 31134109 Free PMC article.
"Integrative genomic analysis of the bioprospection of regulators and accessory enzymes associated with cellulose degradation in a filamentous fungus (Trichoderma harzianum)".
Ferreira Filho JA, Horta MAC, Dos Santos CA, Almeida DA, Murad NF, Mendes JS, Sforça DA, Silva CBC, Crucello A, de Souza AP. Ferreira Filho JA, et al. Among authors: de souza ap. BMC Genomics. 2020 Nov 2;21(1):757. doi: 10.1186/s12864-020-07158-w. BMC Genomics. 2020. PMID: 33138770 Free PMC article.
The Wild Sugarcane and Sorghum Kinomes: Insights Into Expansion, Diversification, and Expression Patterns.
Aono AH, Pimenta RJG, Garcia ALB, Correr FH, Hosaka GK, Carrasco MM, Cardoso-Silva CB, Mancini MC, Sforça DA, Dos Santos LB, Nagai JS, Pinto LR, Landell MGA, Carneiro MS, Balsalobre TW, Quiles MG, Pereira WA, Margarido GRA, de Souza AP. Aono AH, et al. Among authors: de souza ap. Front Plant Sci. 2021 Jul 7;12:668623. doi: 10.3389/fpls.2021.668623. eCollection 2021. Front Plant Sci. 2021. PMID: 34305969 Free PMC article.
311 results