de Oliveira T - Search Results

1

Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: performance evaluation of the new REGA version 3 and seven other tools.

Pineda-Peña AC, Faria NR, Imbrechts S, Libin P, Abecasis AB, Deforche K, Gómez-López A, Camacho RJ, de Oliveira T, Vandamme AM. Pineda-Peña AC, et al. Among authors: de oliveira t. Infect Genet Evol. 2013 Oct;19:337-48. doi: 10.1016/j.meegid.2013.04.032. Epub 2013 May 7. Infect Genet Evol. 2013. PMID: 23660484 Free article.

2

Mosaic genomes of the six major primate lentivirus lineages revealed by phylogenetic analyses.

Salemi M, De Oliveira T, Courgnaud V, Moulton V, Holland B, Cassol S, Switzer WM, Vandamme AM. Salemi M, et al. Among authors: de oliveira t. J Virol. 2003 Jul;77(13):7202-13. doi: 10.1128/jvi.77.13.7202-7213.2003. J Virol. 2003. PMID: 12805419 Free PMC article.

3

Mapping sites of positive selection and amino acid diversification in the HIV genome: an alternative approach to vaccine design?

de Oliveira T, Salemi M, Gordon M, Vandamme AM, van Rensburg EJ, Engelbrecht S, Coovadia HM, Cassol S. de Oliveira T, et al. Genetics. 2004 Jul;167(3):1047-58. doi: 10.1534/genetics.103.018135. Genetics. 2004. PMID: 15280222 Free PMC article.

4

Different epidemic potentials of the HIV-1B and C subtypes.

Salemi M, de Oliveira T, Soares MA, Pybus O, Dumans AT, Vandamme AM, Tanuri A, Cassol S, Fitch WM. Salemi M, et al. Among authors: de oliveira t. J Mol Evol. 2005 May;60(5):598-605. doi: 10.1007/s00239-004-0206-5. J Mol Evol. 2005. PMID: 15983869

5

An automated genotyping system for analysis of HIV-1 and other microbial sequences.

de Oliveira T, Deforche K, Cassol S, Salminen M, Paraskevis D, Seebregts C, Snoeck J, van Rensburg EJ, Wensing AM, van de Vijver DA, Boucher CA, Camacho R, Vandamme AM. de Oliveira T, et al. Bioinformatics. 2005 Oct 1;21(19):3797-800. doi: 10.1093/bioinformatics/bti607. Epub 2005 Aug 2. Bioinformatics. 2005. PMID: 16076886

6

Assessment of automated genotyping protocols as tools for surveillance of HIV-1 genetic diversity.

Gifford R, de Oliveira T, Rambaut A, Myers RE, Gale CV, Dunn D, Shafer R, Vandamme AM, Kellam P, Pillay D; UK Collaborative Group on HIV Drug Resistance. Gifford R, et al. Among authors: de oliveira t. AIDS. 2006 Jul 13;20(11):1521-9. doi: 10.1097/01.aids.0000237368.64488.ae. AIDS. 2006. PMID: 16847407

7

Recombination confounds the early evolutionary history of human immunodeficiency virus type 1: subtype G is a circulating recombinant form.

Abecasis AB, Lemey P, Vidal N, de Oliveira T, Peeters M, Camacho R, Shapiro B, Rambaut A, Vandamme AM. Abecasis AB, et al. Among authors: de oliveira t. J Virol. 2007 Aug;81(16):8543-51. doi: 10.1128/JVI.00463-07. Epub 2007 Jun 6. J Virol. 2007. PMID: 17553886 Free PMC article.

8

Phylogenetic surveillance of viral genetic diversity and the evolving molecular epidemiology of human immunodeficiency virus type 1.

Gifford RJ, de Oliveira T, Rambaut A, Pybus OG, Dunn D, Vandamme AM, Kellam P, Pillay D; UK Collaborative Group on HIV Drug Resistance. Gifford RJ, et al. Among authors: de oliveira t. J Virol. 2007 Dec;81(23):13050-6. doi: 10.1128/JVI.00889-07. Epub 2007 Sep 26. J Virol. 2007. PMID: 17898057 Free PMC article.

9

A standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences.

Alcantara LC, Cassol S, Libin P, Deforche K, Pybus OG, Van Ranst M, Galvão-Castro B, Vandamme AM, de Oliveira T. Alcantara LC, et al. Among authors: de oliveira t. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W634-42. doi: 10.1093/nar/gkp455. Epub 2009 May 29. Nucleic Acids Res. 2009. PMID: 19483099 Free PMC article.

10

Comparative performance of the REGA subtyping tool version 2 versus version 1.

Abecasis AB, Wang Y, Libin P, Imbrechts S, de Oliveira T, Camacho RJ, Vandamme AM. Abecasis AB, et al. Among authors: de oliveira t. Infect Genet Evol. 2010 Apr;10(3):380-5. doi: 10.1016/j.meegid.2009.09.020. Epub 2009 Oct 12. Infect Genet Evol. 2010. PMID: 19822224

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