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Conserved recombination patterns across coronavirus subgenera.
de Klerk A, Swanepoel P, Lourens R, Zondo M, Abodunran I, Lytras S, MacLean OA, Robertson D, Kosakovsky Pond SL, Zehr JD, Kumar V, Stanhope MJ, Harkins G, Murrell B, Martin DP. de Klerk A, et al. Virus Evol. 2022 Jun 14;8(2):veac054. doi: 10.1093/ve/veac054. eCollection 2022. Virus Evol. 2022. PMID: 35814334 Free PMC article.
Exploring the Natural Origins of SARS-CoV-2 in the Light of Recombination.
Lytras S, Hughes J, Martin D, Swanepoel P, de Klerk A, Lourens R, Kosakovsky Pond SL, Xia W, Jiang X, Robertson DL. Lytras S, et al. Among authors: de klerk a. Genome Biol Evol. 2022 Feb 4;14(2):evac018. doi: 10.1093/gbe/evac018. Genome Biol Evol. 2022. PMID: 35137080 Free PMC article.
Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function.
Martin DP, Lytras S, Lucaci AG, Maier W, Grüning B, Shank SD, Weaver S, MacLean OA, Orton RJ, Lemey P, Boni MF, Tegally H, Harkins GW, Scheepers C, Bhiman JN, Everatt J, Amoako DG, San JE, Giandhari J, Sigal A; NGS-SA; Williamson C, Hsiao NY, von Gottberg A, De Klerk A, Shafer RW, Robertson DL, Wilkinson RJ, Sewell BT, Lessells R, Nekrutenko A, Greaney AJ, Starr TN, Bloom JD, Murrell B, Wilkinson E, Gupta RK, de Oliveira T, Kosakovsky Pond SL. Martin DP, et al. Among authors: de klerk a. Mol Biol Evol. 2022 Apr 11;39(4):msac061. doi: 10.1093/molbev/msac061. Mol Biol Evol. 2022. PMID: 35325204 Free PMC article.
Investigating RNA-RNA interactions through computational and biophysical analysis.
Mrozowich T, Park SM, Waldl M, Henrickson A, Tersteeg S, Nelson CR, De Klerk A, Demeler B, Hofacker IL, Wolfinger MT, Patel TR. Mrozowich T, et al. Among authors: de klerk a. Nucleic Acids Res. 2023 May 22;51(9):4588-4601. doi: 10.1093/nar/gkad223. Nucleic Acids Res. 2023. PMID: 36999609 Free PMC article.
Effect of food additives on key bacterial taxa and the mucosa-associated microbiota in Crohn's disease. The ENIGMA study.
Loayza JJJ, Kang S, Schooth L, Teh JJ, de Klerk A, Noon EK, Zhang J, Hu J, Hamilton AL, Wilson-O'Brien A, Trakman GL, Lin W, Ching J, Or L, Sung JJY, Yu J, Ng SC, Kamm MA, Morrison M. Loayza JJJ, et al. Among authors: de klerk a. Gut Microbes. 2023 Jan-Dec;15(1):2172670. doi: 10.1080/19490976.2023.2172670. Gut Microbes. 2023. PMID: 36852457 Free PMC article.
Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA.1 that likely impact Spike function.
Martin DP, Lytras S, Lucaci AG, Maier W, Grüning B, Shank SD, Weaver S, MacLean OA, Orton RJ, Lemey P, Boni MF, Tegally H, Harkins G, Scheepers C, Bhiman JN, Everatt J, Amoako DG, San JE, Giandhari J, Sigal A; NGS-SA; Williamson C, Hsiao NY, von Gottberg A, De Klerk A, Shafer RW, Robertson DL, Wilkinson RJ, Sewell BT, Lessells R, Nekrutenko A, Greaney AJ, Starr TN, Bloom JD, Murrell B, Wilkinson E, Gupta RK, de Oliveira T, Kosakovsky Pond SL. Martin DP, et al. Among authors: de klerk a. bioRxiv [Preprint]. 2022 Jan 18:2022.01.14.476382. doi: 10.1101/2022.01.14.476382. bioRxiv. 2022. PMID: 35075456 Free PMC article. Updated. Preprint.
68 results