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Machine learning techniques to characterize functional traits of plankton from image data.
Orenstein EC, Ayata SD, Maps F, Becker ÉC, Benedetti F, Biard T, de Garidel-Thoron T, Ellen JS, Ferrario F, Giering SLC, Guy-Haim T, Hoebeke L, Iversen MH, Kiørboe T, Lalonde JF, Lana A, Laviale M, Lombard F, Lorimer T, Martini S, Meyer A, Möller KO, Niehoff B, Ohman MD, Pradalier C, Romagnan JB, Schröder SM, Sonnet V, Sosik HM, Stemmann LS, Stock M, Terbiyik-Kurt T, Valcárcel-Pérez N, Vilgrain L, Wacquet G, Waite AM, Irisson JO. Orenstein EC, et al. Among authors: de garidel thoron t. Limnol Oceanogr. 2022 Aug;67(8):1647-1669. doi: 10.1002/lno.12101. Epub 2022 Jun 30. Limnol Oceanogr. 2022. PMID: 36247386 Free PMC article. Review.
The FORCIS database: A global census of planktonic Foraminifera from ocean waters.
Chaabane S, de Garidel-Thoron T, Giraud X, Schiebel R, Beaugrand G, Brummer GJ, Casajus N, Greco M, Grigoratou M, Howa H, Jonkers L, Kucera M, Kuroyanagi A, Meilland J, Monteiro F, Mortyn G, Almogi-Labin A, Asahi H, Avnaim-Katav S, Bassinot F, Davis CV, Field DB, Hernández-Almeida I, Herut B, Hosie G, Howard W, Jentzen A, Johns DG, Keigwin L, Kitchener J, Kohfeld KE, Lessa DVO, Manno C, Marchant M, Ofstad S, Ortiz JD, Post A, Rigual-Hernandez A, Rillo MC, Robinson K, Sagawa T, Sierro F, Takahashi KT, Torfstein A, Venancio I, Yamasaki M, Ziveri P. Chaabane S, et al. Among authors: de garidel thoron t. Sci Data. 2023 Jun 3;10(1):354. doi: 10.1038/s41597-023-02264-2. Sci Data. 2023. PMID: 37270659 Free PMC article.
The global genetic diversity of planktonic foraminifera reveals the structure of cryptic speciation in plankton.
Morard R, Darling KF, Weiner AKM, Hassenrück C, Vanni C, Cordier T, Henry N, Greco M, Vollmar NM, Milivojevic T, Rahman SN, Siccha M, Meilland J, Jonkers L, Quillévéré F, Escarguel G, Douady CJ, de Garidel-Thoron T, de Vargas C, Kucera M. Morard R, et al. Among authors: de garidel thoron t. Biol Rev Camb Philos Soc. 2024 Feb 13. doi: 10.1111/brv.13065. Online ahead of print. Biol Rev Camb Philos Soc. 2024. PMID: 38351434
PFR²: a curated database of planktonic foraminifera 18S ribosomal DNA as a resource for studies of plankton ecology, biogeography and evolution.
Morard R, Darling KF, Mahé F, Audic S, Ujiié Y, Weiner AK, André A, Seears HA, Wade CM, Quillévéré F, Douady CJ, Escarguel G, de Garidel-Thoron T, Siccha M, Kucera M, de Vargas C. Morard R, et al. Among authors: de garidel thoron t. Mol Ecol Resour. 2015 Nov;15(6):1472-85. doi: 10.1111/1755-0998.12410. Epub 2015 Apr 15. Mol Ecol Resour. 2015. PMID: 25828689
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