Zinovyev A - Search Results

1

Applications of single-cell and bulk RNA sequencing in onco-immunology.

Kuksin M, Morel D, Aglave M, Danlos FX, Marabelle A, Zinovyev A, Gautheret D, Verlingue L. Kuksin M, et al. Among authors: zinovyev a. Eur J Cancer. 2021 May;149:193-210. doi: 10.1016/j.ejca.2021.03.005. Epub 2021 Apr 15. Eur J Cancer. 2021. PMID: 33866228 Free article. Review.

2

Assessing reproducibility of matrix factorization methods in independent transcriptomes.

Cantini L, Kairov U, de Reyniès A, Barillot E, Radvanyi F, Zinovyev A. Cantini L, et al. Among authors: zinovyev a. Bioinformatics. 2019 Nov 1;35(21):4307-4313. doi: 10.1093/bioinformatics/btz225. Bioinformatics. 2019. PMID: 30938767 Free PMC article.

3

Single-Cell Analysis Reveals Fibroblast Clusters Linked to Immunotherapy Resistance in Cancer.

Kieffer Y, Hocine HR, Gentric G, Pelon F, Bernard C, Bourachot B, Lameiras S, Albergante L, Bonneau C, Guyard A, Tarte K, Zinovyev A, Baulande S, Zalcman G, Vincent-Salomon A, Mechta-Grigoriou F. Kieffer Y, et al. Among authors: zinovyev a. Cancer Discov. 2020 Sep;10(9):1330-1351. doi: 10.1158/2159-8290.CD-19-1384. Epub 2020 May 20. Cancer Discov. 2020. PMID: 32434947 Free article.

4

Hubness reduction improves clustering and trajectory inference in single-cell transcriptomic data.

Amblard E, Bac J, Chervov A, Soumelis V, Zinovyev A. Amblard E, et al. Among authors: zinovyev a. Bioinformatics. 2022 Jan 27;38(4):1045-1051. doi: 10.1093/bioinformatics/btab795. Bioinformatics. 2022. PMID: 34871374

5

Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization.

Boeva V, Zinovyev A, Bleakley K, Vert JP, Janoueix-Lerosey I, Delattre O, Barillot E. Boeva V, et al. Among authors: zinovyev a. Bioinformatics. 2011 Jan 15;27(2):268-9. doi: 10.1093/bioinformatics/btq635. Epub 2010 Nov 15. Bioinformatics. 2011. PMID: 21081509 Free PMC article.

6

Blind source separation methods for deconvolution of complex signals in cancer biology.

Zinovyev A, Kairov U, Karpenyuk T, Ramanculov E. Zinovyev A, et al. Biochem Biophys Res Commun. 2013 Jan 18;430(3):1182-7. doi: 10.1016/j.bbrc.2012.12.043. Epub 2012 Dec 19. Biochem Biophys Res Commun. 2013. PMID: 23261450 Review.

7

A Modeling Approach to Explain Mutually Exclusive and Co-Occurring Genetic Alterations in Bladder Tumorigenesis.

Remy E, Rebouissou S, Chaouiya C, Zinovyev A, Radvanyi F, Calzone L. Remy E, et al. Among authors: zinovyev a. Cancer Res. 2015 Oct 1;75(19):4042-52. doi: 10.1158/0008-5472.CAN-15-0602. Epub 2015 Aug 3. Cancer Res. 2015. PMID: 26238783

8

A review of computational approaches detecting microRNAs involved in cancer.

Cantini L, Caselle M, Forget A, Zinovyev A, Barillot E, Martignetti L. Cantini L, et al. Among authors: zinovyev a. Front Biosci (Landmark Ed). 2017 Jun 1;22(10):1774-1791. doi: 10.2741/4571. Front Biosci (Landmark Ed). 2017. PMID: 28410145 Free article. Review.

9

Determining the optimal number of independent components for reproducible transcriptomic data analysis.

Kairov U, Cantini L, Greco A, Molkenov A, Czerwinska U, Barillot E, Zinovyev A. Kairov U, et al. Among authors: zinovyev a. BMC Genomics. 2017 Sep 11;18(1):712. doi: 10.1186/s12864-017-4112-9. BMC Genomics. 2017. PMID: 28893186 Free PMC article.

10

PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling.

Letort G, Montagud A, Stoll G, Heiland R, Barillot E, Macklin P, Zinovyev A, Calzone L. Letort G, et al. Among authors: zinovyev a. Bioinformatics. 2019 Apr 1;35(7):1188-1196. doi: 10.1093/bioinformatics/bty766. Bioinformatics. 2019. PMID: 30169736 Free PMC article.

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