Zhou J - Search Results

1

Spatial transcriptional mapping of the human nephrogenic program.

Lindström NO, Sealfon R, Chen X, Parvez RK, Ransick A, De Sena Brandine G, Guo J, Hill B, Tran T, Kim AD, Zhou J, Tadych A, Watters A, Wong A, Lovero E, Grubbs BH, Thornton ME, McMahon JA, Smith AD, Ruffins SW, Armit C, Troyanskaya OG, McMahon AP. Lindström NO, et al. Among authors: zhou j. Dev Cell. 2021 Aug 23;56(16):2381-2398.e6. doi: 10.1016/j.devcel.2021.07.017. Dev Cell. 2021. PMID: 34428401 Free PMC article.

2

Global quantitative modeling of chromatin factor interactions.

Zhou J, Troyanskaya OG. Zhou J, et al. PLoS Comput Biol. 2014 Mar 27;10(3):e1003525. doi: 10.1371/journal.pcbi.1003525. eCollection 2014 Mar. PLoS Comput Biol. 2014. PMID: 24675896 Free PMC article.

3

Predicting effects of noncoding variants with deep learning-based sequence model.

Zhou J, Troyanskaya OG. Zhou J, et al. Nat Methods. 2015 Oct;12(10):931-4. doi: 10.1038/nmeth.3547. Epub 2015 Aug 24. Nat Methods. 2015. PMID: 26301843 Free PMC article.

4

Probabilistic modelling of chromatin code landscape reveals functional diversity of enhancer-like chromatin states.

Zhou J, Troyanskaya OG. Zhou J, et al. Nat Commun. 2016 Feb 4;7:10528. doi: 10.1038/ncomms10528. Nat Commun. 2016. PMID: 26841971 Free PMC article.

5

Deep learning sequence-based ab initio prediction of variant effects on expression and disease risk.

Zhou J, Theesfeld CL, Yao K, Chen KM, Wong AK, Troyanskaya OG. Zhou J, et al. Nat Genet. 2018 Aug;50(8):1171-1179. doi: 10.1038/s41588-018-0160-6. Epub 2018 Jul 16. Nat Genet. 2018. PMID: 30013180 Free PMC article.

6

Single-cell analysis of progenitor cell dynamics and lineage specification in the human fetal kidney.

Menon R, Otto EA, Kokoruda A, Zhou J, Zhang Z, Yoon E, Chen YC, Troyanskaya O, Spence JR, Kretzler M, Cebrián C. Menon R, et al. Among authors: zhou j. Development. 2018 Aug 30;145(16):dev164038. doi: 10.1242/dev.164038. Development. 2018. PMID: 30166318 Free PMC article.

7

Organoid single cell profiling identifies a transcriptional signature of glomerular disease.

Harder JL, Menon R, Otto EA, Zhou J, Eddy S, Wys NL, O'Connor C, Luo J, Nair V, Cebrian C, Spence JR, Bitzer M, Troyanskaya OG, Hodgin JB, Wiggins RC, Freedman BS, Kretzler M; European Renal cDNA Bank (ERCB); Nephrotic Syndrome Study Network (NEPTUNE). Harder JL, et al. Among authors: zhou j. JCI Insight. 2019 Jan 10;4(1):e122697. doi: 10.1172/jci.insight.122697. JCI Insight. 2019. PMID: 30626756 Free PMC article.

8

Selene: a PyTorch-based deep learning library for sequence data.

Chen KM, Cofer EM, Zhou J, Troyanskaya OG. Chen KM, et al. Among authors: zhou j. Nat Methods. 2019 Apr;16(4):315-318. doi: 10.1038/s41592-019-0360-8. Epub 2019 Mar 28. Nat Methods. 2019. PMID: 30923381 Free PMC article.

9

Whole-genome deep-learning analysis identifies contribution of noncoding mutations to autism risk.

Zhou J, Park CY, Theesfeld CL, Wong AK, Yuan Y, Scheckel C, Fak JJ, Funk J, Yao K, Tajima Y, Packer A, Darnell RB, Troyanskaya OG. Zhou J, et al. Nat Genet. 2019 Jun;51(6):973-980. doi: 10.1038/s41588-019-0420-0. Epub 2019 May 27. Nat Genet. 2019. PMID: 31133750 Free PMC article.

10

Accurate genome-wide predictions of spatio-temporal gene expression during embryonic development.

Zhou J, Schor IE, Yao V, Theesfeld CL, Marco-Ferreres R, Tadych A, Furlong EEM, Troyanskaya OG. Zhou J, et al. PLoS Genet. 2019 Sep 25;15(9):e1008382. doi: 10.1371/journal.pgen.1008382. eCollection 2019 Sep. PLoS Genet. 2019. PMID: 31553718 Free PMC article.

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