Zhang Y - Search Results

1

Mapping transcriptomic vector fields of single cells.

Qiu X, Zhang Y, Martin-Rufino JD, Weng C, Hosseinzadeh S, Yang D, Pogson AN, Hein MY, Hoi Joseph Min K, Wang L, Grody EI, Shurtleff MJ, Yuan R, Xu S, Ma Y, Replogle JM, Lander ES, Darmanis S, Bahar I, Sankaran VG, Xing J, Weissman JS. Qiu X, et al. Among authors: zhang y. Cell. 2022 Feb 17;185(4):690-711.e45. doi: 10.1016/j.cell.2021.12.045. Epub 2022 Feb 1. Cell. 2022. PMID: 35108499 Free PMC article.

2

A Stress Response that Monitors and Regulates mRNA Structure Is Central to Cold Shock Adaptation.

Zhang Y, Burkhardt DH, Rouskin S, Li GW, Weissman JS, Gross CA. Zhang Y, et al. Mol Cell. 2018 Apr 19;70(2):274-286.e7. doi: 10.1016/j.molcel.2018.02.035. Epub 2018 Apr 5. Mol Cell. 2018. PMID: 29628307 Free PMC article.

3

Operon mRNAs are organized into ORF-centric structures that predict translation efficiency.

Burkhardt DH, Rouskin S, Zhang Y, Li GW, Weissman JS, Gross CA. Burkhardt DH, et al. Among authors: zhang y. Elife. 2017 Jan 31;6:e22037. doi: 10.7554/eLife.22037. Elife. 2017. PMID: 28139975 Free PMC article.

4

Cold Shock Response in Bacteria.

Zhang Y, Gross CA. Zhang Y, et al. Annu Rev Genet. 2021 Nov 23;55:377-400. doi: 10.1146/annurev-genet-071819-031654. Epub 2021 Sep 16. Annu Rev Genet. 2021. PMID: 34530639 Review.

5

Replication-transcription conflicts in bacteria.

Merrikh H, Zhang Y, Grossman AD, Wang JD. Merrikh H, et al. Among authors: zhang y. Nat Rev Microbiol. 2012 Jun 6;10(7):449-58. doi: 10.1038/nrmicro2800. Nat Rev Microbiol. 2012. PMID: 22669220 Free PMC article. Review.

6

DksA guards elongating RNA polymerase against ribosome-stalling-induced arrest.

Zhang Y, Mooney RA, Grass JA, Sivaramakrishnan P, Herman C, Landick R, Wang JD. Zhang Y, et al. Mol Cell. 2014 Mar 6;53(5):766-78. doi: 10.1016/j.molcel.2014.02.005. Mol Cell. 2014. PMID: 24606919 Free PMC article.

7

The context of the ribosome binding site in mRNAs defines specificity of action of kasugamycin, an inhibitor of translation initiation.

Zhang Y, Aleksashin NA, Klepacki D, Anderson C, Vázquez-Laslop N, Gross CA, Mankin AS. Zhang Y, et al. Proc Natl Acad Sci U S A. 2022 Jan 25;119(4):e2118553119. doi: 10.1073/pnas.2118553119. Proc Natl Acad Sci U S A. 2022. PMID: 35064089 Free PMC article.

8

Global analysis of translation termination in E. coli.

Baggett NE, Zhang Y, Gross CA. Baggett NE, et al. Among authors: zhang y. PLoS Genet. 2017 Mar 16;13(3):e1006676. doi: 10.1371/journal.pgen.1006676. eCollection 2017 Mar. PLoS Genet. 2017. PMID: 28301469 Free PMC article.

9

The transcription factor DksA prevents conflicts between DNA replication and transcription machinery.

Tehranchi AK, Blankschien MD, Zhang Y, Halliday JA, Srivatsan A, Peng J, Herman C, Wang JD. Tehranchi AK, et al. Among authors: zhang y. Cell. 2010 May 14;141(4):595-605. doi: 10.1016/j.cell.2010.03.036. Cell. 2010. PMID: 20478253 Free PMC article.

10

Phosphorothioate-modified G-quadruplex as a signal-on dual-mode reporter for CRISPR/Cas12a-based portable detection of environmental pollutants.

Shi K, Tian Y, Liu S, Luo W, Liu K, Zhang L, Zhang Y, Chang J, Zhang J, Wang S. Shi K, et al. Among authors: zhang y. Anal Chim Acta. 2024 Jun 15;1308:342649. doi: 10.1016/j.aca.2024.342649. Epub 2024 Apr 25. Anal Chim Acta. 2024. PMID: 38740457

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