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Identification of Somatic Structural Variants in Solid Tumors by Optical Genome Mapping.
Goldrich DY, LaBarge B, Chartrand S, Zhang L, Sadowski HB, Zhang Y, Pham K, Way H, Lai CJ, Pang AWC, Clifford B, Hastie AR, Oldakowski M, Goldenberg D, Broach JR. Goldrich DY, et al. Among authors: zhang l, zhang y. J Pers Med. 2021 Feb 18;11(2):142. doi: 10.3390/jpm11020142. J Pers Med. 2021. PMID: 33670576 Free PMC article.
Integrative detection and analysis of structural variation in cancer genomes.
Dixon JR, Xu J, Dileep V, Zhan Y, Song F, Le VT, Yardımcı GG, Chakraborty A, Bann DV, Wang Y, Clark R, Zhang L, Yang H, Liu T, Iyyanki S, An L, Pool C, Sasaki T, Rivera-Mulia JC, Ozadam H, Lajoie BR, Kaul R, Buckley M, Lee K, Diegel M, Pezic D, Ernst C, Hadjur S, Odom DT, Stamatoyannopoulos JA, Broach JR, Hardison RC, Ay F, Noble WS, Dekker J, Gilbert DM, Yue F. Dixon JR, et al. Among authors: zhang l. Nat Genet. 2018 Oct;50(10):1388-1398. doi: 10.1038/s41588-018-0195-8. Epub 2018 Sep 10. Nat Genet. 2018. PMID: 30202056 Free PMC article.
Paenibacillus infection with frequent viral coinfection contributes to postinfectious hydrocephalus in Ugandan infants.
Paulson JN, Williams BL, Hehnly C, Mishra N, Sinnar SA, Zhang L, Ssentongo P, Mbabazi-Kabachelor E, Wijetunge DSS, von Bredow B, Mulondo R, Kiwanuka J, Bajunirwe F, Bazira J, Bebell LM, Burgoine K, Couto-Rodriguez M, Ericson JE, Erickson T, Ferrari M, Gladstone M, Guo C, Haran M, Hornig M, Isaacs AM, Kaaya BN, Kangere SM, Kulkarni AV, Kumbakumba E, Li X, Limbrick DD Jr, Magombe J, Morton SU, Mugamba J, Ng J, Olupot-Olupot P, Onen J, Peterson MR, Roy F, Sheldon K, Townsend R, Weeks AD, Whalen AJ, Quackenbush J, Ssenyonga P, Galperin MY, Almeida M, Atkins H, Warf BC, Lipkin WI, Broach JR, Schiff SJ. Paulson JN, et al. Among authors: zhang l. Sci Transl Med. 2020 Sep 30;12(563):eaba0565. doi: 10.1126/scitranslmed.aba0565. Sci Transl Med. 2020. PMID: 32998967 Free PMC article.
Immune activation during Paenibacillus brain infection in African infants with frequent cytomegalovirus co-infection.
Isaacs AM, Morton SU, Movassagh M, Zhang Q, Hehnly C, Zhang L, Morales DM, Sinnar SA, Ericson JE, Mbabazi-Kabachelor E, Ssenyonga P, Onen J, Mulondo R, Hornig M, Warf BC, Broach JR, Townsend RR, Limbrick DD Jr, Paulson JN, Schiff SJ. Isaacs AM, et al. Among authors: zhang l, zhang q. iScience. 2021 Mar 23;24(4):102351. doi: 10.1016/j.isci.2021.102351. eCollection 2021 Apr 23. iScience. 2021. PMID: 33912816 Free PMC article.
Vaginal microbiome topic modeling of laboring Ugandan women with and without fever.
Movassagh M, Bebell LM, Burgoine K, Hehnly C, Zhang L, Moran K, Sheldon K, Sinnar SA, Mbabazi-Kabachelor E, Kumbakumba E, Bazira J, Ochora M, Mulondo R, Nsubuga BK, Weeks AD, Gladstone M, Olupot-Olupot P, Ngonzi J, Roberts DJ, Meier FA, Irizarry RA, Broach JR, Schiff SJ, Paulson JN. Movassagh M, et al. Among authors: zhang l. NPJ Biofilms Microbiomes. 2021 Sep 10;7(1):75. doi: 10.1038/s41522-021-00244-1. NPJ Biofilms Microbiomes. 2021. PMID: 34508087 Free PMC article.
Differential richness inference for 16S rRNA marker gene surveys.
Kumar MS, Slud EV, Hehnly C, Zhang L, Broach J, Irizarry RA, Schiff SJ, Paulson JN. Kumar MS, et al. Among authors: zhang l. Genome Biol. 2022 Aug 1;23(1):166. doi: 10.1186/s13059-022-02722-x. Genome Biol. 2022. PMID: 35915508 Free PMC article.
Optical genome mapping in acute myeloid leukemia: a multicenter evaluation.
Levy B, Baughn LB, Akkari Y, Chartrand S, LaBarge B, Claxton D, Lennon PA, Cujar C, Kolhe R, Kroeger K, Pitel B, Sahajpal N, Sathanoori M, Vlad G, Zhang L, Fang M, Kanagal-Shamanna R, Broach JR. Levy B, et al. Among authors: zhang l. Blood Adv. 2023 Apr 11;7(7):1297-1307. doi: 10.1182/bloodadvances.2022007583. Blood Adv. 2023. PMID: 36417763 Free PMC article.
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