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Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase.
Yagi S, Padhi AK, Vucinic J, Barbe S, Schiex T, Nakagawa R, Simoncini D, Zhang KYJ, Tagami S. Yagi S, et al. Among authors: zhang kyj. J Am Chem Soc. 2021 Oct 6;143(39):15998-16006. doi: 10.1021/jacs.1c05367. Epub 2021 Sep 24. J Am Chem Soc. 2021. PMID: 34559526
Durandal: fast exact clustering of protein decoys.
Berenger F, Shrestha R, Zhou Y, Simoncini D, Zhang KY. Berenger F, et al. J Comput Chem. 2012 Feb 5;33(4):471-4. doi: 10.1002/jcc.21988. Epub 2011 Nov 26. J Comput Chem. 2012. PMID: 22120171
Computational design of a self-assembling symmetrical β-propeller protein.
Voet AR, Noguchi H, Addy C, Simoncini D, Terada D, Unzai S, Park SY, Zhang KY, Tame JR. Voet AR, et al. Proc Natl Acad Sci U S A. 2014 Oct 21;111(42):15102-7. doi: 10.1073/pnas.1412768111. Epub 2014 Oct 6. Proc Natl Acad Sci U S A. 2014. PMID: 25288768 Free PMC article.
Fragger: a protein fragment picker for structural queries.
Berenger F, Simoncini D, Voet A, Shrestha R, Zhang KYJ. Berenger F, et al. Among authors: zhang kyj. F1000Res. 2017 Sep 22;6:1722. doi: 10.12688/f1000research.12486.2. eCollection 2017. F1000Res. 2017. PMID: 29399321 Free PMC article.
127 results