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Proteogenomic Characterization of Endometrial Carcinoma.
Dou Y, Kawaler EA, Cui Zhou D, Gritsenko MA, Huang C, Blumenberg L, Karpova A, Petyuk VA, Savage SR, Satpathy S, Liu W, Wu Y, Tsai CF, Wen B, Li Z, Cao S, Moon J, Shi Z, Cornwell M, Wyczalkowski MA, Chu RK, Vasaikar S, Zhou H, Gao Q, Moore RJ, Li K, Sethuraman S, Monroe ME, Zhao R, Heiman D, Krug K, Clauser K, Kothadia R, Maruvka Y, Pico AR, Oliphant AE, Hoskins EL, Pugh SL, Beecroft SJI, Adams DW, Jarman JC, Kong A, Chang HY, Reva B, Liao Y, Rykunov D, Colaprico A, Chen XS, Czekański A, Jędryka M, Matkowski R, Wiznerowicz M, Hiltke T, Boja E, Kinsinger CR, Mesri M, Robles AI, Rodriguez H, Mutch D, Fuh K, Ellis MJ, DeLair D, Thiagarajan M, Mani DR, Getz G, Noble M, Nesvizhskii AI, Wang P, Anderson ML, Levine DA, Smith RD, Payne SH, Ruggles KV, Rodland KD, Ding L, Zhang B, Liu T, Fenyö D; Clinical Proteomic Tumor Analysis Consortium. Dou Y, et al. Among authors: zhang b. Cell. 2020 Feb 20;180(4):729-748.e26. doi: 10.1016/j.cell.2020.01.026. Epub 2020 Feb 13. Cell. 2020. PMID: 32059776 Free PMC article.
Fast network centrality analysis using GPUs.
Shi Z, Zhang B. Shi Z, et al. Among authors: zhang b. BMC Bioinformatics. 2011 May 12;12:149. doi: 10.1186/1471-2105-12-149. BMC Bioinformatics. 2011. PMID: 21569426 Free PMC article.
WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013.
Wang J, Duncan D, Shi Z, Zhang B. Wang J, et al. Among authors: zhang b. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W77-83. doi: 10.1093/nar/gkt439. Epub 2013 May 23. Nucleic Acids Res. 2013. PMID: 23703215 Free PMC article.
Computational methods for omics data.
Zhao Z, Zhang B, Huang Y, Xu H, McDermott JE. Zhao Z, et al. Among authors: zhang b. Int J Comput Biol Drug Des. 2014;7(2-3):97-101. doi: 10.1504/IJCBDD.2014. Epub 2014 May 28. Int J Comput Biol Drug Des. 2014. PMID: 24878722 No abstract available.
Integrative genomics and computational systems medicine.
McDermott JE, Huang Y, Zhang B, Xu H, Zhao Z. McDermott JE, et al. Among authors: zhang b. Biomed Res Int. 2014;2014:945253. doi: 10.1155/2014/945253. Epub 2014 Jun 15. Biomed Res Int. 2014. PMID: 25025078 Free PMC article. No abstract available.
Proteogenomic characterization of human colon and rectal cancer.
Zhang B, Wang J, Wang X, Zhu J, Liu Q, Shi Z, Chambers MC, Zimmerman LJ, Shaddox KF, Kim S, Davies SR, Wang S, Wang P, Kinsinger CR, Rivers RC, Rodriguez H, Townsend RR, Ellis MJ, Carr SA, Tabb DL, Coffey RJ, Slebos RJ, Liebler DC; NCI CPTAC. Zhang B, et al. Nature. 2014 Sep 18;513(7518):382-7. doi: 10.1038/nature13438. Epub 2014 Jul 20. Nature. 2014. PMID: 25043054 Free PMC article.
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