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803 results

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Interoperable and scalable data analysis with microservices: applications in metabolomics.
Emami Khoonsari P, Moreno P, Bergmann S, Burman J, Capuccini M, Carone M, Cascante M, de Atauri P, Foguet C, Gonzalez-Beltran AN, Hankemeier T, Haug K, He S, Herman S, Johnson D, Kale N, Larsson A, Neumann S, Peters K, Pireddu L, Rocca-Serra P, Roger P, Rueedi R, Ruttkies C, Sadawi N, Salek RM, Sansone SA, Schober D, Selivanov V, Thévenot EA, van Vliet M, Zanetti G, Steinbeck C, Kultima K, Spjuth O. Emami Khoonsari P, et al. Among authors: zanetti g. Bioinformatics. 2019 Oct 1;35(19):3752-3760. doi: 10.1093/bioinformatics/btz160. Bioinformatics. 2019. PMID: 30851093 Free PMC article.
wft4galaxy: a workflow testing tool for galaxy.
Piras ME, Pireddu L, Zanetti G. Piras ME, et al. Among authors: zanetti g. Bioinformatics. 2017 Dec 1;33(23):3805-3807. doi: 10.1093/bioinformatics/btx461. Bioinformatics. 2017. PMID: 29036536 Free PMC article.
PhenoMeNal: processing and analysis of metabolomics data in the cloud.
Peters K, Bradbury J, Bergmann S, Capuccini M, Cascante M, de Atauri P, Ebbels TMD, Foguet C, Glen R, Gonzalez-Beltran A, Günther UL, Handakas E, Hankemeier T, Haug K, Herman S, Holub P, Izzo M, Jacob D, Johnson D, Jourdan F, Kale N, Karaman I, Khalili B, Emami Khonsari P, Kultima K, Lampa S, Larsson A, Ludwig C, Moreno P, Neumann S, Novella JA, O'Donovan C, Pearce JTM, Peluso A, Piras ME, Pireddu L, Reed MAC, Rocca-Serra P, Roger P, Rosato A, Rueedi R, Ruttkies C, Sadawi N, Salek RM, Sansone SA, Selivanov V, Spjuth O, Schober D, Thévenot EA, Tomasoni M, van Rijswijk M, van Vliet M, Viant MR, Weber RJM, Zanetti G, Steinbeck C. Peters K, et al. Among authors: zanetti g. Gigascience. 2019 Feb 1;8(2):giy149. doi: 10.1093/gigascience/giy149. Gigascience. 2019. PMID: 30535405 Free PMC article.
BioBlend.objects: metacomputing with Galaxy.
Leo S, Pireddu L, Cuccuru G, Lianas L, Soranzo N, Afgan E, Zanetti G. Leo S, et al. Among authors: zanetti g. Bioinformatics. 2014 Oct;30(19):2816-7. doi: 10.1093/bioinformatics/btu386. Epub 2014 Jun 12. Bioinformatics. 2014. PMID: 24928211 Free PMC article.
SeqPig: simple and scalable scripting for large sequencing data sets in Hadoop.
Schumacher A, Pireddu L, Niemenmaa M, Kallio A, Korpelainen E, Zanetti G, Heljanko K. Schumacher A, et al. Among authors: zanetti g. Bioinformatics. 2014 Jan 1;30(1):119-20. doi: 10.1093/bioinformatics/btt601. Epub 2013 Oct 22. Bioinformatics. 2014. PMID: 24149054 Free PMC article.
The future of metabolomics in ELIXIR.
van Rijswijk M, Beirnaert C, Caron C, Cascante M, Dominguez V, Dunn WB, Ebbels TMD, Giacomoni F, Gonzalez-Beltran A, Hankemeier T, Haug K, Izquierdo-Garcia JL, Jimenez RC, Jourdan F, Kale N, Klapa MI, Kohlbacher O, Koort K, Kultima K, Le Corguillé G, Moreno P, Moschonas NK, Neumann S, O'Donovan C, Reczko M, Rocca-Serra P, Rosato A, Salek RM, Sansone SA, Satagopam V, Schober D, Shimmo R, Spicer RA, Spjuth O, Thévenot EA, Viant MR, Weber RJM, Willighagen EL, Zanetti G, Steinbeck C. van Rijswijk M, et al. Among authors: zanetti g. F1000Res. 2017 Sep 6;6:ELIXIR-1649. doi: 10.12688/f1000research.12342.2. eCollection 2017. F1000Res. 2017. PMID: 29043062 Free PMC article.
The openEHR Genomics Project.
Mascia C, Frexia F, Uva P, Zanetti G, Pireddu L, Giacomelli G, Jaeger-Schmidt C, Tomczak A, Schumacher S, Kraecher F, Eils R, Ljosland Bakke S, Leslie H. Mascia C, et al. Among authors: zanetti g. Stud Health Technol Inform. 2020 Jun 16;270:443-447. doi: 10.3233/SHTI200199. Stud Health Technol Inform. 2020. PMID: 32570423
Orione, a web-based framework for NGS analysis in microbiology.
Cuccuru G, Orsini M, Pinna A, Sbardellati A, Soranzo N, Travaglione A, Uva P, Zanetti G, Fotia G. Cuccuru G, et al. Among authors: zanetti g. Bioinformatics. 2014 Jul 1;30(13):1928-9. doi: 10.1093/bioinformatics/btu135. Epub 2014 Mar 10. Bioinformatics. 2014. PMID: 24618473 Free PMC article.
803 results