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Pathway-based classification of glioblastoma uncovers a mitochondrial subtype with therapeutic vulnerabilities.
Garofano L, Migliozzi S, Oh YT, D'Angelo F, Najac RD, Ko A, Frangaj B, Caruso FP, Yu K, Yuan J, Zhao W, Di Stefano AL, Bielle F, Jiang T, Sims P, Suvà ML, Tang F, Su XD, Ceccarelli M, Sanson M, Lasorella A, Iavarone A. Garofano L, et al. Among authors: yuan j. Nat Cancer. 2021 Feb;2(2):141-156. doi: 10.1038/s43018-020-00159-4. Epub 2021 Jan 11. Nat Cancer. 2021. PMID: 33681822 Free PMC article.
SPOTs fill a major gap in RNA quantification.
Yuan J, Sims PA. Yuan J, et al. Nat Methods. 2017 Nov 30;14(12):1137-1138. doi: 10.1038/nmeth.4515. Nat Methods. 2017. PMID: 29190269 No abstract available.
A map of tumor-host interactions in glioma at single-cell resolution.
Caruso FP, Garofano L, D'Angelo F, Yu K, Tang F, Yuan J, Zhang J, Cerulo L, Pagnotta SM, Bedognetti D, Sims PA, Suvà M, Su XD, Lasorella A, Iavarone A, Ceccarelli M. Caruso FP, et al. Among authors: yuan j. Gigascience. 2020 Oct 14;9(10):giaa109. doi: 10.1093/gigascience/giaa109. Gigascience. 2020. PMID: 33155039 Free PMC article.
ERK1/2 phosphorylation predicts survival following anti-PD-1 immunotherapy in recurrent glioblastoma.
Arrieta VA, Chen AX, Kane JR, Kang SJ, Kassab C, Dmello C, Zhao J, Burdett KB, Upadhyayula PS, Lee-Chang C, Shilati J, Jaishankar D, Chen L, Gould A, Zhang D, Yuan J, Zhao W, Ling X, Burks JK, Laffleur B, Amidei C, Bruce JN, Lukas RV, Yamaguchi JT, Cieremans D, Rothschild G, Basu U, McCord M, Brat DJ, Zhang H, Cooper LAD, Zhang B, Sims P, Cloughesy TF, Prins R, Canoll P, Stupp R, Heimberger AB, Horbinski C, Iwamoto FM, Rabadan R, Sonabend AM. Arrieta VA, et al. Among authors: yuan j. Nat Cancer. 2021 Dec;2(12):1372-1386. doi: 10.1038/s43018-021-00260-2. Epub 2021 Nov 29. Nat Cancer. 2021. PMID: 35121903 Free PMC article.
Single-Cell Transcriptomic Analysis of Tumor Heterogeneity.
Levitin HM, Yuan J, Sims PA. Levitin HM, et al. Among authors: yuan j. Trends Cancer. 2018 Apr;4(4):264-268. doi: 10.1016/j.trecan.2018.02.003. Epub 2018 Mar 9. Trends Cancer. 2018. PMID: 29606308 Free PMC article. Review.
Single-cell transcriptome analysis of lineage diversity in high-grade glioma.
Yuan J, Levitin HM, Frattini V, Bush EC, Boyett DM, Samanamud J, Ceccarelli M, Dovas A, Zanazzi G, Canoll P, Bruce JN, Lasorella A, Iavarone A, Sims PA. Yuan J, et al. Genome Med. 2018 Jul 24;10(1):57. doi: 10.1186/s13073-018-0567-9. Genome Med. 2018. PMID: 30041684 Free PMC article.
Integrating single-cell RNA-seq and imaging with SCOPE-seq2.
Liu Z, Yuan J, Lasorella A, Iavarone A, Bruce JN, Canoll P, Sims PA. Liu Z, et al. Among authors: yuan j. Sci Rep. 2020 Nov 10;10(1):19482. doi: 10.1038/s41598-020-76599-w. Sci Rep. 2020. PMID: 33173156 Free PMC article.
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