Yong J - Search Results

1

Platform-integrated mRNA isoform quantification.

Sun J, Chang JW, Zhang T, Yong J, Kuang R, Zhang W. Sun J, et al. Among authors: yong j. Bioinformatics. 2020 Apr 15;36(8):2466-2473. doi: 10.1093/bioinformatics/btz932. Bioinformatics. 2020. PMID: 31834359 Free PMC article.

2

mRNA 3'-UTR shortening is a molecular signature of mTORC1 activation.

Chang JW, Zhang W, Yeh HS, de Jong EP, Jun S, Kim KH, Bae SS, Beckman K, Hwang TH, Kim KS, Kim DH, Griffin TJ, Kuang R, Yong J. Chang JW, et al. Among authors: yong j. Nat Commun. 2015 Jun 15;6:7218. doi: 10.1038/ncomms8218. Nat Commun. 2015. PMID: 26074333 Free article.

3

An integrative somatic mutation analysis to identify pathways linked with survival outcomes across 19 cancer types.

Park S, Kim SJ, Yu D, Peña-Llopis S, Gao J, Park JS, Chen B, Norris J, Wang X, Chen M, Kim M, Yong J, Wardak Z, Choe K, Story M, Starr T, Cheong JH, Hwang TH. Park S, et al. Among authors: yong j. Bioinformatics. 2016 Jun 1;32(11):1643-51. doi: 10.1093/bioinformatics/btv692. Epub 2015 Dec 3. Bioinformatics. 2016. PMID: 26635139 Free PMC article.

4

Network-Based Isoform Quantification with RNA-Seq Data for Cancer Transcriptome Analysis.

Zhang W, Chang JW, Lin L, Minn K, Wu B, Chien J, Yong J, Zheng H, Kuang R. Zhang W, et al. Among authors: yong j. PLoS Comput Biol. 2015 Dec 23;11(12):e1004465. doi: 10.1371/journal.pcbi.1004465. eCollection 2015 Dec. PLoS Comput Biol. 2015. PMID: 26699225 Free PMC article.

5

Ribo-Proteomics Approach to Profile RNA-Protein and Protein-Protein Interaction Networks.

Yeh HS, Chang JW, Yong J. Yeh HS, et al. Among authors: yong j. Methods Mol Biol. 2016;1421:165-74. doi: 10.1007/978-1-4939-3591-8_14. Methods Mol Biol. 2016. PMID: 26965265

6

Analyses of alternative polyadenylation: from old school biochemistry to high-throughput technologies.

Yeh HS, Zhang W, Yong J. Yeh HS, et al. Among authors: yong j. BMB Rep. 2017 Apr;50(4):201-207. doi: 10.5483/bmbrep.2017.50.4.019. BMB Rep. 2017. PMID: 28148393 Free PMC article. Review.

7

An integrative model for alternative polyadenylation, IntMAP, delineates mTOR-modulated endoplasmic reticulum stress response.

Chang JW, Zhang W, Yeh HS, Park M, Yao C, Shi Y, Kuang R, Yong J. Chang JW, et al. Among authors: yong j. Nucleic Acids Res. 2018 Jul 6;46(12):5996-6008. doi: 10.1093/nar/gky340. Nucleic Acids Res. 2018. PMID: 29733382 Free PMC article.

8

Network-based machine learning and graph theory algorithms for precision oncology.

Zhang W, Chien J, Yong J, Kuang R. Zhang W, et al. Among authors: yong j. NPJ Precis Oncol. 2017 Aug 8;1(1):25. doi: 10.1038/s41698-017-0029-7. eCollection 2017. NPJ Precis Oncol. 2017. PMID: 29872707 Free PMC article. Review.

9

mTOR-regulated U2af1 tandem exon splicing specifies transcriptome features for translational control.

Chang JW, Yeh HS, Park M, Erber L, Sun J, Cheng S, Bui AM, Fahmi NA, Nasti R, Kuang R, Chen Y, Zhang W, Yong J. Chang JW, et al. Among authors: yong j. Nucleic Acids Res. 2019 Nov 4;47(19):10373-10387. doi: 10.1093/nar/gkz761. Nucleic Acids Res. 2019. PMID: 31504847 Free PMC article.

10

A large-scale comparative study of isoform expressions measured on four platforms.

Zhang W, Petegrosso R, Chang JW, Sun J, Yong J, Chien J, Kuang R. Zhang W, et al. Among authors: yong j. BMC Genomics. 2020 Mar 30;21(1):272. doi: 10.1186/s12864-020-6643-8. BMC Genomics. 2020. PMID: 32228441 Free PMC article.

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