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Phased, chromosome-scale genome assemblies of tetraploid potato reveal a complex genome, transcriptome, and predicted proteome landscape underpinning genetic diversity.
Hoopes G, Meng X, Hamilton JP, Achakkagari SR, de Alves Freitas Guesdes F, Bolger ME, Coombs JJ, Esselink D, Kaiser NR, Kodde L, Kyriakidou M, Lavrijssen B, van Lieshout N, Shereda R, Tuttle HK, Vaillancourt B, Wood JC, de Boer JM, Bornowski N, Bourke P, Douches D, van Eck HJ, Ellis D, Feldman MJ, Gardner KM, Hopman JCP, Jiang J, De Jong WS, Kuhl JC, Novy RG, Oome S, Sathuvalli V, Tan EH, Ursum RA, Vales MI, Vining K, Visser RGF, Vossen J, Yencho GC, Anglin NL, Bachem CWB, Endelman JB, Shannon LM, Strömvik MV, Tai HH, Usadel B, Buell CR, Finkers R. Hoopes G, et al. Among authors: yencho gc. Mol Plant. 2022 Mar 7;15(3):520-536. doi: 10.1016/j.molp.2022.01.003. Epub 2022 Jan 10. Mol Plant. 2022. PMID: 35026436 Free article.
QTL mapping of internal heat necrosis in tetraploid potato.
McCord PH, Sosinski BR, Haynes KG, Clough ME, Yencho GC. McCord PH, et al. Among authors: yencho gc. Theor Appl Genet. 2011 Jan;122(1):129-42. doi: 10.1007/s00122-010-1429-z. Epub 2010 Aug 28. Theor Appl Genet. 2011. PMID: 20803134
Genetic Variance Partitioning and Genome-Wide Prediction with Allele Dosage Information in Autotetraploid Potato.
Endelman JB, Carley CAS, Bethke PC, Coombs JJ, Clough ME, da Silva WL, De Jong WS, Douches DS, Frederick CM, Haynes KG, Holm DG, Miller JC, Muñoz PR, Navarro FM, Novy RG, Palta JP, Porter GA, Rak KT, Sathuvalli VR, Thompson AL, Yencho GC. Endelman JB, et al. Among authors: yencho gc. Genetics. 2018 May;209(1):77-87. doi: 10.1534/genetics.118.300685. Epub 2018 Mar 7. Genetics. 2018. PMID: 29514860 Free PMC article.
Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement.
Wu S, Lau KH, Cao Q, Hamilton JP, Sun H, Zhou C, Eserman L, Gemenet DC, Olukolu BA, Wang H, Crisovan E, Godden GT, Jiao C, Wang X, Kitavi M, Manrique-Carpintero N, Vaillancourt B, Wiegert-Rininger K, Yang X, Bao K, Schaff J, Kreuze J, Gruneberg W, Khan A, Ghislain M, Ma D, Jiang J, Mwanga ROM, Leebens-Mack J, Coin LJM, Yencho GC, Buell CR, Fei Z. Wu S, et al. Among authors: yencho gc. Nat Commun. 2018 Nov 2;9(1):4580. doi: 10.1038/s41467-018-06983-8. Nat Commun. 2018. PMID: 30389915 Free PMC article.
Quantitative trait loci and differential gene expression analyses reveal the genetic basis for negatively associated β-carotene and starch content in hexaploid sweetpotato [Ipomoea batatas (L.) Lam.].
Gemenet DC, da Silva Pereira G, De Boeck B, Wood JC, Mollinari M, Olukolu BA, Diaz F, Mosquera V, Ssali RT, David M, Kitavi MN, Burgos G, Felde TZ, Ghislain M, Carey E, Swanckaert J, Coin LJM, Fei Z, Hamilton JP, Yada B, Yencho GC, Zeng ZB, Mwanga ROM, Khan A, Gruneberg WJ, Buell CR. Gemenet DC, et al. Among authors: yencho gc. Theor Appl Genet. 2020 Jan;133(1):23-36. doi: 10.1007/s00122-019-03437-7. Epub 2019 Oct 8. Theor Appl Genet. 2020. PMID: 31595335 Free PMC article.
Multiple QTL Mapping in Autopolyploids: A Random-Effect Model Approach with Application in a Hexaploid Sweetpotato Full-Sib Population.
da Silva Pereira G, Gemenet DC, Mollinari M, Olukolu BA, Wood JC, Diaz F, Mosquera V, Gruneberg WJ, Khan A, Buell CR, Yencho GC, Zeng ZB. da Silva Pereira G, et al. Among authors: yencho gc. Genetics. 2020 Jul;215(3):579-595. doi: 10.1534/genetics.120.303080. Epub 2020 May 5. Genetics. 2020. PMID: 32371382 Free PMC article.
Genotype-by-environment interactions and local adaptation shape selection in the US National Chip Processing Trial.
Agha HI, Endelman JB, Chitwood-Brown J, Clough M, Coombs J, De Jong WS, Douches DS, Higgins CR, Holm DG, Novy R, Resende MFR, Sathuvalli V, Thompson AL, Yencho GC, Zotarelli L, Shannon LM. Agha HI, et al. Among authors: yencho gc. Theor Appl Genet. 2024 Apr 10;137(5):99. doi: 10.1007/s00122-024-04610-3. Theor Appl Genet. 2024. PMID: 38598016 Free PMC article.
42 results