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BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets.
Manubens-Gil L, Zhou Z, Chen H, Ramanathan A, Liu X, Liu Y, Bria A, Gillette T, Ruan Z, Yang J, Radojević M, Zhao T, Cheng L, Qu L, Liu S, Bouchard KE, Gu L, Cai W, Ji S, Roysam B, Wang CW, Yu H, Sironi A, Iascone DM, Zhou J, Bas E, Conde-Sousa E, Aguiar P, Li X, Li Y, Nanda S, Wang Y, Muresan L, Fua P, Ye B, He HY, Staiger JF, Peter M, Cox DN, Simonneau M, Oberlaender M, Jefferis G, Ito K, Gonzalez-Bellido P, Kim J, Rubel E, Cline HT, Zeng H, Nern A, Chiang AS, Yao J, Roskams J, Livesey R, Stevens J, Liu T, Dang C, Guo Y, Zhong N, Tourassi G, Hill S, Hawrylycz M, Koch C, Meijering E, Ascoli GA, Peng H. Manubens-Gil L, et al. Among authors: yao j. Nat Methods. 2023 Jun;20(6):824-835. doi: 10.1038/s41592-023-01848-5. Epub 2023 Apr 17. Nat Methods. 2023. PMID: 37069271
SODB facilitates comprehensive exploration of spatial omics data.
Yuan Z, Pan W, Zhao X, Zhao F, Xu Z, Li X, Zhao Y, Zhang MQ, Yao J. Yuan Z, et al. Among authors: yao j. Nat Methods. 2023 Mar;20(3):387-399. doi: 10.1038/s41592-023-01773-7. Epub 2023 Feb 16. Nat Methods. 2023. PMID: 36797409
Streamlining spatial omics data analysis with Pysodb.
Lin S, Zhao F, Wu Z, Yao J, Zhao Y, Yuan Z. Lin S, et al. Among authors: yao j. Nat Protoc. 2024 Mar;19(3):831-895. doi: 10.1038/s41596-023-00925-5. Epub 2023 Dec 22. Nat Protoc. 2024. PMID: 38135744 Review.
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